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US 9,751,868 B2Granted
Benzocyanine compounds
AssigneesPierce Biotechnology, Inc., Dyomics GmbH
InventorsGreg Hermanson, Peter T. Czerney, Surbhi Desai, Matthias S. Wenzel, Boguslawa R. Dworecki, Frank G. Lehmann, Marie Christine Nlend
Life of this patent
Estimating the term…
Abstract
Compounds useful as labels with properties comparable to known fluorescent compounds. The compounds are conjugated to proteins and nucleic acids for biological imaging and analysis. Synthesis of the compounds, formation and use of the conjugated compounds, and specific non-limiting examples of each are provided.
Claims11
A compound selected from the group consisting of
- where
- each of R1, R2, R5, and R6 is the same or different and is independently selected from the group consisting of an aliphatic, heteroaliphatic, sulfoalkyl, heteroaliphatic with terminal SO3, a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, a sulfonamide group -L-SO2NH—P—Z, and a caboxamide group -L-CONH—P—Z, where Z is selected from H, CH3, a CH3 group, an alkyl group, or a heteroalkyl group;
- each of R7, R8, R11, R12, R13, and R14 is the same or different and is independently selected from the group consisting of H, SO3, a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, a sulfonamide-containing group -L-SO2NH—P—Z, and a carboxamide-containing group -L-CONH—P—Z, where Z is selected from H, CH3, a CH3 group, an alkyl group, or a heteroalkyl group;
- L is selected from a divalent linear (—(CH2)t—, t=0 to 15), crossed, or cyclic alkyl group optionally substituted by at least one oxygen atom and/or sulfur atom;
- Kat is a number of Na+, K+, Ca2+, ammonia, or other cation(s) needed to compensate the negative charge brought by the cyanine;
- m is an integer from 0 to 5 inclusive;
- p is an integer from 1 to 6 inclusive;
- each of R3 and R4 is the same or different and is independently hydrogen, an aliphatic group, a heteroaliphatic group, or a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, and Z is selected from H, a CH3 group, an alkyl group, or a heteroalkyl group;
- or R3 and R4 together form a cyclic structure where R3 and R4 are joined using a divalent structural element selected from the group consisting of —(CH2)q—, —(CH2)qO(CH2)q′—, —(CH2)qS(CH2)q′—, —(CH2)qCH═CH—, —OCH═CH— where each of q and q′ is the same or different and is a integer from 2 to 6 inclusive;
- and
- Y is selected from the group consisting of hydrogen, alkyl, sulfoalkyl, fluorine, chlorine, bromine, a substituted or unsubstituted aryl-, phenoxy-, phenylmercapto function, a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, and Z is selected from H, a CH3 group, an alkyl group, or a heteroalkyl group, and an oxygen-containing group ORPM, where RPM is selected from the group consisting of hydrogen, a substituted or unsubstituted alkyl group, a substituted or unsubstituted heteroalkyl group, a substituted or unsubstituted cyclic alkyl group, a substituted or unsubstituted heterocyclic alkyl group, a substituted or unsubstituted aryl group, and a substituted or unsubstituted heteroaryl group, where the group can be substituted one or more times with one or more of the following groups:
- hydroxyl, sulfo, carboxy, and/or amino.
9 more elements
A compound selected from the group consisting of
- where
- each of R1, R2, R5, and R6 is the same or different and is independently selected from the group consisting of an aliphatic, heteroaliphatic, sulfoalkyl, heteroaliphatic with terminal SO3, a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, a sulfonamide group -L-SO2NH—P—Z, and a caboxamide group -L-CONH—P—Z, where Z is selected from H, CH3, a CH3 group, an alkyl group, or a heteroalkyl group;
- each of R7, R8, R11, R12, R13, and R14 is the same or different and is independently selected from the group consisting of H, SO3, a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, a sulfonamide-containing group -L-SO2NH—P—Z, and a carboxamide-containing group -L-CONH—P—Z, where Z is selected from H, CH3, a CH3 group, an alkyl group, or a heteroalkyl group;
- X is selected from —OH, —SH, —NH2, —NH—NH2, —F, —Cl, —Br, —I, —NHS (hydroxysuccinimidyl/sulfosuccinimidyl), —O-TFP (2,3,5,6-tetrafluorophenoxy), —O-STP (4-sulfo-2,3,5,6-tetrafluorophenoxy), —O-benzotriazole, -benzotriazole, imidazole, azide, —O-carbodiimide, —NR-L-OH, —NR-L-O-phosphoramidite, —NR-L-SH, —NR-L-NH2, —NR-L-NH—NH2, —NR-L-CO2H, —NR-L-CO—NHS, —NR-L-CO-STP, —NR-L-CO-TFP, —NR-L-CO-benzotriazole, —NR-L-CHO, —NR-L-maleimide, —NR-L-NH—CO—CH2—I, or —NR-L-NH—CO—CH2—Br wherein R is —H or an aliphatic or heteroaliphatic group;
- L is selected from a divalent linear (—(CH2)t—, t=0 to 15), crossed, or cyclic alkyl group optionally substituted by at least one oxygen atom and/or sulfur atom;
- Kat is a number of Na+, K+, Ca2+, ammonia, or other cation(s) needed to compensate the negative charge brought by the cyanine;
- m is an integer from 0 to 5 inclusive;
- p is an integer from 1 to 6 inclusive;
- each of R3 and R4 is the same or different and is independently hydrogen, an aliphatic group, a heteroaliphatic group, or a PEG group P—Z where P is selected from an ethylene glycol group, a diethylene glycol group, and a (poly)ethylene glycol group, where the (poly)ethylene glycol group is (CH2CH2O)s, where s is an integer from 3-6 inclusive, and Z is selected from H, a CH3 group, an alkyl group, or a heteroalkyl group;
- or R3 and R4 together form a cyclic structure where R3 and R4 are joined using a divalent structural element selected from the group consisting of —(CH2)q—, —(CH2)qO(CH2)q′—, —(CH2)qS(CH2)q′—, —(CH2)qCH═CH—, —OCH═CH— where each of q and q′ is the same or different and is a integer from 2 to 6 inclusive;
- and
- Y is an oxygen-containing group ORPM, where RPM is selected from the group consisting of hydrogen, a substituted or unsubstituted alkyl group, a substituted or unsubstituted heteroalkyl group, a substituted or unsubstituted cyclic alkyl group, a substituted or unsubstituted heterocyclic alkyl group, a substituted aryl group, and a substituted or unsubstituted heteroaryl group, where the group can be substituted one or more times with one or more of the following groups:
- hydroxyl, sulfo, carboxy, and/or amino.
10 more elements
Dependencies are inferred from the claim text.