Ert2 mutants, inducible cell death systems, and uses thereof
AssigneeSenti Biosciences, Inc.
InventorsRebecca Tayler Cottman, Michelle Elizabeth Hung, Russell Morrison Gordley, Timothy Kuan-Ta Lu, Assen Boyanov Roguev, Karen Lai Len Chu
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Abstract
Provided herein are mutants of estrogen receptor alpha ligand binding domain (ER-LBD), and inducible cell death systems that include mutants of estrogen receptor alpha ligand binding domain (ER-LBD). Also provided are methods of for use of the same, such as inducing cell death in a cell.
Claims21
An inducible cell-death system comprising a polypeptide, wherein the polypeptide comprises a ligand binding domain and a cell death inducing domain, wherein the polypeptide is configured upon contact with a ligand of the ligand binding domain to generate a cell-death inducing signal in a cell in which the polypeptide is expressed, and wherein the ligand binding domain comprises a modified estrogen receptor ligand binding domain (ER-LBD) corresponding to a hormone binding domain of a reference human estrogen receptor sequence (SEQ ID NO:
- 1),
- wherein the modified ER-LBD comprises
- (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and
- (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions are with reference to one or more regions selected from:
- positions 343-354, positions 380-392, positions 404-463, positions 517-540, and position 547 of SEQ ID NO:
- 1,
- optionally wherein the modified ER-LBD has greater sensitivity to a non-endogenous ligand as compared to an ER-LBD comprising the amino acid sequence of SEQ ID NO:
- 2, optionally wherein the modified ER-LBD has greater sensitivity to a non-endogenous ligand as compared to an endogenous ligand as a result of the one or more additional amino acid substitutions, optionally wherein the modified ER-LBD has greater selectivity to a non-endogenous ligand as compared to an ER-LBD comprising the amino acid sequence of SEQ ID NO:
- 2,
- optionally wherein the ligand binding domain of the first polypeptide monomer and the second polypeptide monomer comprise the same additional amino acid substitutions.
An inducible cell death system comprising a first polypeptide and a second polypeptide monomer, wherein the first and the second polypeptide monomers each comprise a ligand binding domain and a cell death inducing domain, wherein the first and the second polypeptide monomers are configured to oligomerize upon contact with a ligand of the ligand binding domain, thereby generating a cell-death inducing signal in a cell in which the first and the second polypeptide monomers are expressed, and wherein
- the ligand binding domain comprises a modified estrogen receptor ligand binding domain (ER-LBD) comprising an amino acid sequence corresponding to a hormone binding domain of a reference human estrogen receptor sequence (SEQ ID NO:
- 1), wherein the modified ER-LBD comprises:
- (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and
- (b) additional amino acid substitutions, wherein the additional amino acid substitutions comprise, with reference to SEQ ID NO:
- 1:
- (i) an L384M substitution, an L391V substitution, a N413D substitution, an M421L substitution, a S463P substitution, and a H524L substitution,
- (ii) an L391V substitution, a N413D substitution, a Q414E substitution, a S463P substitution, and a H524F substitution,
- (iii) an L354I substitution, a L391V substitution, a N413D substitution, a Q414E substitution, a M421L substitution, a M517A substitution, and a H524F substitution, or
- (iv) an L354I substitution, a L391V substitution, a L409V substitution, a N413D substitution, a Q414E substitution, and a H524L substitution.
A modified estrogen receptor ligand binding domain (ER-LBD) corresponding to a hormone binding domain of a reference human estrogen receptor sequence (SEQ ID NO:
- 1), wherein:
- a. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an N413D substitution, an S463P substitution, an L354I substitution, an L384M substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- b. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an N413D substitution, an S463P substitution, an M421L substitution, an L354I substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- c. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L409V substitution, an N413D substitution, an S463P substitution, an M421L substitution, an L384M substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- d. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an Q414E substitution, an N413D substitution, an S463P substitution, an M517A substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- e. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an N413D substitution, an S463P substitution, an M517A substitution, an M421L substitution, an L354I substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- f. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an Q414E substitution, an N413D substitution, an S463P substitution, an M421L substitution, an L354I substitution, an L384M substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- g. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an N413D substitution, an S463P substitution, an M517A substitution, an M421L substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- h. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an Q414E substitution, an N413D substitution, an S463P substitution, an L354I substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- i. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an N413D substitution, an S463P substitution, an M421L substitution, an L354I substitution, an L384M substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- j. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an Q414E substitution, an N413D substitution, an S463P substitution, an M517A substitution, an M421L substitution, an L354I substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- k. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an N413D substitution, an S463P substitution, an M517A substitution, an L384M substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- l. the modified ER-LBD comprises (a) a G400V amino acid substitution, an M543A amino acid substitution, an L544A amino acid substitution, and optionally a V595A amino acid substitution, with reference to SEQ ID NO:
- 1;
- and (b) one or more additional amino acid substitutions, wherein the one or more additional amino acid substitutions comprise:
- an L391V substitution, an L409V substitution, an N413D substitution, an S463P substitution, an M517A substitution, and an H524L substitution, with reference to SEQ ID NO:
- 1;
- or
- m. the modified ER-LBD comprises an amino acid sequence having at least 80%, 85%, 90%, 95%, 97.5%, 98%, 99%, or 100% identical to any one of SEQ ID NO:
- 90, SEQ ID NO:
- 91, SEQ ID NO:
- 92, SEQ ID NO:
- 93, SEQ ID NO:
- 94, SEQ ID NO:
- 95, SEQ ID NO:
- 96, SEQ ID NO:
- 97, SEQ ID NO:
- 98, SEQ ID NO:
- 99, SEQ ID NO:
- 100, SEQ ID NO:
- 101, SEQ ID NO:
- 103, SEQ ID NO:
- 104, SEQ ID NO:
- 105, SEQ ID NO:
- 106, SEQ ID NO:
- 107, SEQ ID NO:
- 108, SEQ ID NO:
- 109, SEQ ID NO:
- 110, SEQ ID NO:
- 111, SEQ ID NO:
- 112, SEQ ID NO:
- 113, and SEQ ID NO:
- 114,
- optionally wherein the modified ER-LBD has greater sensitivity and/or selectivity to a non-endogenous ligand as compared to an ER-LBD comprising the amino acid sequence of SEQ ID NO:
- 2, or as compared to an endogenous ligand as a result of the one or more additional amino acid substitutions, optionally wherein the non-endogenous ligand is selected from the group consisting of:
- 4-hydroxytamoxifen, N-desmethyltamoxifen, tamoxifen-N-oxide, tamoxifen, and endoxifen, optionally wherein the endogenous ligand is estradiol, optionally wherein the modified ER-LBD further comprises a V595A amino acid substitution.
Dependencies are inferred from the claim text.