Adeno-associated viral vectors and uses thereof
AssigneeThe Broad Institute, Inc.
InventorsKen Y. CHAN, Benjamin E. DEVERMAN, FatmaElzahraa Abdelmouty EID
Life of this patent
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Abstract
The invention provides adeno-associated viral vectors and methods of using such vectors for cell transduction.
Claims28
An adeno-associated virus (AAV) capsid polypeptide comprising a peptide inserted within the capsid polypeptide, wherein the peptide comprises an amino acid sequence selected from the group consisting of RPNRDTS (SEQ ID NO:
- 144800);
- MDGQRRI (SEQ ID NO:
- 132518);
- ETNRAGR (SEQ ID NO:
- 116028);
- TGRVDSR (SEQ ID NO:
- 149619);
- NMTRARD (SEQ ID NO:
- 136472);
- GEKPKFT (SEQ ID NO:
- 164722);
- MEPRQRT (SEQ ID NO:
- 132640);
- and variants thereof comprising a substitution or deletion of one or two amino acids.
4-6. (canceled)
11-13. (canceled)
An adeno-associated virus (AAV) capsid polypeptide comprising a peptide inserted within the capsid polypeptide, wherein the peptide comprises a motif selected from those listed in Tables 2-27.
19-25. (canceled)
The library of claim 12, wherein the capsid is an AAV1, AAV2, AAV3, AAV3b, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV9 K449R, rh.10, rh.8, or LK03 capsid polypeptide.
(canceled)
The library of claim 12, wherein the library comprises an amino acid sequence motif selected from the group consisting of:
- [RQMT] [RNQP] [RQPS] [ANQGST] **G;
- [QTV] [ANQGKP] [RNGSTY] * [ARGT] * [GP];
- [RKSV] [FPS] ** [RT] [QGS] [GS];
- [GST] * [QT] [NQ]R*G;
- [TV] ** [NS]R[QGM]G;
- [RNQT] [ANPS] [RNS] ** [NQGS]G;
- T [NGS] **R[AQS]G;
- NR** [NG] [QG]A;
- R**QGGG (SEQ ID NO:
- 199501);
- [QF] [KS] [RN] ** [NP] [AP];
- QR**S [TV]A (SEQ ID NO:
- 199502);
- [QKM] *G[RSV] [KT] *G;
- [QMTV] [RN] * [ANV] [RQS] * [GS];
- [NQ]R[NGP] [NQS] **A;
- [QT] * [RT] [RT] * [NQG] [AG];
- NTR**SA (SEQ ID NO:
- 199503);
- QRP* [AS] * [AS];
- RQ**TNA (SEQ ID NO:
- 199504);
- QRP** [MV] [AS];
- [RN] *N[RS] *[QG]G;
- [MTV]R[PS] *[QT] *G;
- [RY]S*[QK] *Q[GS];
- MRG**MG (SEQ ID NO:
- 199505);
- [GV] *[NT] *R[QS]G;
- [ST] [RQ] [RS]T**A;
- R*S*STP (SEQ ID NO:
- 199506);
- QR**TNG (SEQ ID NO:
- 199507);
- Q*RQT*P (SEQ ID NO:
- 199508);
- [NQ]RQ*[GS] *A;
- TR**NNA (SEQ ID NO:
- 199509);
- [RT]S*[RQ] [QS] *A;
- GQ*RV*G (SEQ ID NO:
- 199510);
- T*TSR*G (SEQ ID NO:
- 199511);
- TRG**TG (SEQ ID NO:
- 199512);
- NR* [GT] * [TV]G;
- T*RT*SA (SEQ ID NO:
- 199513);
- MG*R*GA (SEQ ID NO:
- 199514);
- [NQ]R*[NQ]S*A;
- RQ*PT*A (SEQ ID NO:
- 199515);
- T*T*RSG (SEQ ID NO:
- 199516);
- T*RGS*P (SEQ ID NO:
- 199517);
- TR**TMG (SEQ ID NO:
- 199518);
- R*TS*SP (SEQ ID NO:
- 199519);
- N**QRSA (SEQ ID NO:
- 199520);
- [QT] [RK] *S* [TY]A;
- QR*PA*G (SEQ ID NO:
- 199521);
- RS*S*GG (SEQ ID NO:
- 199522);
- RTS*S*P (SEQ ID NO:
- 199523);
- TRQ*T*G (SEQ ID NO:
- 199524);
- QR*S*TG (SEQ ID NO:
- 199525);
- R*NS*SP (SEQ ID NO:
- 199526);
- MR*G*QS (SEQ ID NO:
- 199527);
- N**SRQG (SEQ ID NO:
- 199528);
- NR*ST*A (SEQ ID NO:
- 199529);
- RSQ*G*G (SEQ ID NO:
- 199530);
- T*RTN*A (SEQ ID NO:
- 199531);
- T*S*RMG (SEQ ID NO:
- 199532);
- TR**TQA (SEQ ID NO:
- 199533);
- and TRT**SG (SEQ ID NO:
- 199534);
- YSGK**G (SEQ ID NO:
- 199535);
- or polynucleotides encoding the same, where “*” represents any amino acid and square brackets denote a list of amino acids that may occur at a position;
- and/or
- wherein the library comprises an amino acid sequence motif selected from the group consisting of:
- [RQGKST] [ARNQGFPST] ** [ARNQGKMTV] [ANQGMSV]G;
- [{circumflex over ( )}ADCEHILKPW] [ARNQGKPS] [ARNQGKST] [ARNQKPSTV] **[NDGPS];
- [NQKMFSTY] [RNGKT] [{circumflex over ( )}CEHILKFSWY] ** [RNQKMPSTV] [ANDEPS];
- [{circumflex over ( )}ARDCEHILW] [RGLKPSY] * [NQGKPSTV] * [ANQGFST]G;
- [{circumflex over ( )}ARDCEHILPW] [ARQGKPT] [RQGKPST] ** [ANGMST]G;
- [{circumflex over ( )}ADCQEHILW] [NQGLKMPST] * [{circumflex over ( )}NCEHILMFWY] [ARNQGMTV] * [GS];
- [RGMY] [ANQGPS] [NQKPST] ** [ANGKMST]G;
- [NQGKFSTV] [RNQGKS] ** [ARNGKT] [NQGKFSYV] [ANDGS];
- [{circumflex over ( )}ARDCEHILFW] * [ARNQGKMPT] [RQGKPSTV] * [AQGST]G;
- [{circumflex over ( )}ARDCEHILPW] * [RNGKPST] * [ARNGKSV] [NQGKMST]G;
- [RNKT] [RNQPS] *[RQGPS] [RQGS] *[APS];
- [RNMPY] [RNQKPS] * [ANQTV] * [ANQGKTV] [DGPS];
- [NQGKMFTV] [ARQGKMPTV] [RNQGKPTY] * [ARQKMST] *G;
- [RNQMFST] [RNQGKT] *[ARNQPST] *[AQGSTY] [APS];
- [QGKMSTV] * [ARNQGKMPT] [RNQGKT] [ARNSTV] *G;
- [RMT] * [NQKT] * [ARQGT] [ANQS] [GP];
- [RKMSV] **L[ANQGKPS] [NGMSTV] [ANGKSTV] [DGS];
- [NQKMPTYV] * [ARGKPTV] [NGST] [RNQKST] * [GPS];
- [RNQKMSY] [RQKST] [ADQKPST] * [AKSTV] * [ADPS];
- [RK] ** [NG] [AS] [GT]A;
- [RQ] * [RNPST] [AQGST] [AQGSTV] * [GPS];
- R[QPS] *S* [QGV]G;
- [RKV] [NGKP] *N[ANGT] *G;
- [NQGLKFT] [NGKS] [QKMS] ** [ARQKSV] [ANDEG];
- [RQMS] * [RNQKST] [NPST] * [ARNQGMS] [DGP];
- [RKT] ** [PST] [QT] [ANG]G;
- [NQKMT] [ARDKPST] [RNGKP] *G*G;
- [RNQKMFT] [RDGKPST] [RNQGKPT] *[NQGST] *[AS];
- [RNQMST] [RNDQKST] [RGKPST] [AQGKPST] **[APSV];
- [QKT] * [KS] * [AQGS] [NQS] [AS];
- [KFV] * [ANK] * [ST] [KS] [AD];
- [RQKMTYV] [RNDKPS] [RQGPS] [NDQGPST] ** [GP];
- [NQMT]R*[NGPTV] [AQGS] *[GS];
- [QMSY] [RKP] **S[AQGKV] [ADGS];
- R[NS] ** [ANQ] [AQT]A;
- R[QS] **T [NQ] [AS];
- [RQ] * [KPT] [GST] * [ANQGT]G;
- [RN] [RQP] * [GPS]T*A;
- [RNMPT] * [RNGKST] [ANDQKPST] [RNGST] *A;
- K[QPS] *[NMS] *[QV] [GS];
- K*[NQG] *[NT] [AST]G;
- RN*Q*SG (SEQ ID NO:
- 199536);
- K* [ANGST] [NST] * [AMS] [GS];
- KT*S*GA (SEQ ID NO:
- 199537);
- [RKMT] [RQKPST]S*[ARSTV] *G;
- [KM] *N*GNA (SEQ ID NO:
- 199538);
- N**S [GT] [GM]A;
- K* [GPS] [GT] [AT] *A;
- [QG]K* [GTV] [AMS] * [AN];
- [RQT] * [RNQPT] [RNST] * [QGS]A;
- [NQ] [RK] ** [GS]TA;
- [TV] **NRQG (SEQ ID NO:
- 199539);
- R[AGPS] [NQPT] *[NGST] *G;
- R[MST]N**[QT] [GP];
- [RNQ] * [PT] [GT] [RS] *A;
- RS**NTG (SEQ ID NO:
- 199540);
- [RK] *[PS]G*[NQGT]A;
- Q*KSA*A (SEQ ID NO:
- 199541);
- KN*G*TA (SEQ ID NO:
- 199542);
- K*S*[AS]GA (SEQ ID NO:
- 199543);
- [NG]K*[AS] [GT] *A;
- [GV]NS*[RK] *G;
- KT*S*SA (SEQ ID NO:
- 199544);
- [RM] [KP] *[AS]S*G;
- VK**STG (SEQ ID NO:
- 199545);
- [QKT] [RQGMSTV] [AGKP] [NGST] **A;
- PR*AT*G (SEQ ID NO:
- 199546);
- TRS*T*M (SEQ ID NO:
- 199547);
- T**RQQA (SEQ ID NO:
- 199548);
- KN*S*SG (SEQ ID NO:
- 199549);
- RNS*[AG] *G (SEQ ID NO:
- 199550);
- R*S* [AS]T [PS];
- [RG] [KS]S* [GT] * [AG];
- QR*NS*A (SEQ ID NO:
- 199551);
- R*SN*TG (SEQ ID NO:
- 199552);
- R*[NS] *[GT]GG;
- RAP**NS (SEQ ID NO:
- 199553);
- R*NNS*G (SEQ ID NO:
- 199554);
- [NK] * [GKP] [GST] * [GS]A;
- QK*GT*G (SEQ ID NO:
- 199555);
- T**NRGG (SEQ ID NO:
- 199556);
- VK*AS*A (SEQ ID NO:
- 199557);
- K*P*TGG (SEQ ID NO:
- 199558);
- K**QNQG (SEQ ID NO:
- 199559);
- R*S*TAP (SEQ ID NO:
- 199560);
- K*S[NG] *[GS] [GS];
- R*SN*NA (SEQ ID NO:
- 199561);
- RMP**GA (SEQ ID NO:
- 199562);
- [RW] [ANP]N[AKS] **A;
- KT**SGG (SEQ ID NO:
- 199563);
- R*P*TGA (SEQ ID NO:
- 199564);
- N**QRSA (SEQ ID NO:
- 199520);
- K*[NQ]ST*A (SEQ ID NO:
- 199565);
- MKN[TV] **A (SEQ ID NO:
- 199566);
- KGNN**G (SEQ ID NO:
- 199567);
- TKP**AA (SEQ ID NO:
- 199568);
- TR*GT*G (SEQ ID NO:
- 199569);
- KN*G*SA (SEQ ID NO:
- 199570);
- K*ASS*A (SEQ ID NO:
- 199571);
- KLNS**G (SEQ ID NO:
- 199572);
- N**SRQG (SEQ ID NO:
- 199528);
- and
- QNR*A*P (SEQ ID NO:
- 199573);
- R*P*AGA (SEQ ID NO:
- 199574);
- RT**STP (SEQ ID NO:
- 199575);
- SRTT*NG (SEQ ID NO:
- 199576);
- T*RT*NA (SEQ ID NO:
- 199577);
- TK*NS*G (SEQ ID NO:
- 199578);
- TRP**AA (SEQ ID NO:
- 199579);
- or polynucleotides encoding the same, where “*” represents any amino acid, square brackets surrounding a list of amino acids not preceded by the symbol “{circumflex over ( )}” denote a list of amino acids that may occur at a position, and square brackets surrounding a list of amino acids preceded by the symbol “{circumflex over ( )}” denote a list of amino acids that may not occur at a position.
(canceled)
The library 14, wherein a viral particle having a capsid comprising the motif has increased binding to a cell of interest relative to a control viral particle.
32-80. (canceled)
(canceled)
84-89. (canceled)
A viral particle identified by the method of claim 19.
Dependencies are inferred from the claim text.