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US 2023/0142714 A1Published application
Ketone inhibitors of lysine gingipain
AssigneeCortexyme, Inc.
InventorsAndrei W. Konradi, Robert A. Galemmo, JR., Stephen S. Dominy, Casey C. Lynch, Leslie J. Holsinger
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Abstract
The present invention provides compounds according to Formula I as described herein, and their use for inhibiting the lysine gingipain protease (Kgp) from the bacterium Porphyromonas gingivalis. Also described are gingipain activity probe compounds and methods for assaying gingipain activity are also described, as well as methods for the treatment of disorders associated with P. gingivalis infection, including brain disorders such as Alzheimer's disease.
Claims20
A compound according to Formula I:
- or a pharmaceutically acceptable salt thereof, wherein:
- A is selected from the group consisting of —CH2— and —O—;
- R1a and R1b are each independently selected from the group consisting of hydrogen, C1-4 alkyl, and an amine protecting group;
- R2a and R2b are each independently selected from the group consisting of hydrogen, halogen, C1-4 haloalkyl, and C1-4 haloalkoxy;
- R3 is selected from the group consisting of C3-8 cycloalkyl, C3-8 alkyl, 3- to 12-membered heterocyclyl, C6-10 aryl, 5- to 12-membered heteroaryl, and a reporter moiety wherein R3 is optionally substituted with one or more R3a substituents;
- each R3a is independently selected from the group consisting of halogen, —CN, —NO2, —N3, —OH, C1-4 alkyl, C1-4 haloalkyl, C1-4 alkoxy, C1-4 haloalkoxy, —N(Rc)2, —N+(Rb)3, —(CH2)kC(O)Rb, —NRc(CH2)uC(O)Rb, —O(CH2)uC(O)Rb, —(CH2)kCONRcRc, —(CH2)kNRcC(O)Rb, —NRc(CH2)uCONRcRc, —NRc(CH2)uNRcC—(O)Rb, —O(CH2)uCONRcRc, and —O(CH2)uNRcC(O)Rb, and optionally substituted triazolyl;
- each Rb is independently selected from the group consisting of C1-4 alkyl, C1-4 haloalkyl, and C1-4 deuteroalkyl;
- each Rc is independently selected from the group consisting of hydrogen and C1-8 alkyl;
- each subscript k is independently selected from 0, 1, 2, 3, 4, 5, and 6;
- each subscript u is independently selected from 1, 2, 3, 4, 5, and 6;
- R4 is selected from the group consisting of hydrogen and C1-4 alkyl;
- R5 is selected from the group consisting of —CH2R5a, —CHS(O)(R5b)2, and C1-6 haloalkyl;
- R5a is selected from the group consisting of —O—R6, —S—R7, —SO—R7, —SO2—R7, —N(R8)2, 5- to 12-membered heteroaryl, and 3- to 12-membered heterocyclyl,
- wherein 5- to 12-membered heteroaryl is optionally substituted with one or more members independently selected from the group consisting of halogen, C1-3 alkyl, and C1-3 haloalkyl, and
- 3- to 12-membered heterocyclyl is optionally substituted with one or more members independently selected from the group consisting of oxo, halogen, C1-3 alkyl, and C1-3 haloalkyl;
- each R5b is independently selected C1-6 alkyl;
- R6 and R7 are selected from the group consisting of phenyl, C1-6 alkyl, C1-6 haloalkyl, and 5- to 12-membered heteroaryl,
- wherein phenyl is substituted with 1-5 halogens, and
- wherein 5- to 12-membered heteroaryl is optionally substituted with one or more halogen, C1-3 alkyl, or C1-3 haloalkyl;
- each R8 is independently selected C1-6 alkyl;
- and
- R5 optionally comprises a quenching moiety R9;
- provided that R5 is other than 2,3,5,6-tetrafluorophenoxymethyl.
20 more elements
Dependencies are inferred from the claim text.