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US 2021/0277059 A1Published application
Stabilized minimal coiled-coil mimetics
AssigneeNew York University
InventorsParamjit S. ARORA, Michael G. WUO
Life of this patent
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Abstract
This invention relates to a macrostructure that includes an antiparallel coiled-coil structure shown below or a parallel coiled-coil structure shown below and described in the present application.
Claims26
A macrostructure comprising:
- (i) an antiparallel coiled-coil structure of formula:
- wherein:
- each and each is independently absent or a modified or unmodified amino acid residue or analogue thereof, with the proviso that at least seven contiguous amino acid residues/analogues are present in each coil, wherein
- a, b, c, d, e, f, g, a′, b′, c′, d′, e′, f′, and g′ indicate the location of the amino acid residues/analogues within the coiled-coil structure and
- each amino acid residue is a modified or unmodified amino acid selected from the group consisting of cysteine, homocysteine, selenocysteine, leucine, isoleucine, hexafluoroleucine, valine, hexafluorovaline, allylglycine, threonine, and analogues of each of the preceding residues;
- each is absent or a covalent linker (Linker) between two amino acid residues/analogues, wherein:
- each Linker A is independently a linker between a g* amino acid residue and a g′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the g* amino acid residue and the Cα position of the g′* amino acid residue is 10-25 Å;
- each Linker B is independently a linker between an a* amino acid residue and a d′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the a* amino acid residue and the Cα position of the d′* amino acid residue is 5-15 Å;
- each Linker C is independently a linker between a d* amino acid residue and an a′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the d* amino acid residue and the Cα position of the a′* amino acid residue is 5-15 Å;
- each Linker D is independently a linker between an e* amino acid residue and an e′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the e* amino acid residue and the Cα position of the e′* amino acid residue is 10-25 Å;
- and
- at least one Linker A or Linker D is present;
- each is a point of attachment from a terminal nitrogen to H, —PG1, —C(O)R, —C(O)NR2, —C(O)NH2, —R, —C(O)OR, an amino acid, a peptide, a tag, or a targeting moiety, where each R is independently hydrogen, an alkyl, an alkenyl, an alkynyl, a cycloalkyl, an aryl, a heteroaryl, a heterocyclyl, an arylalkyl, a peptide, a targeting moiety, or a tag;
- and wherein PG1 is a protecting group for protection of an amine;
- and
- each is a point of attachment from a terminal carbonyl to H, —OPG2, —NPG2, —OR, —OH, —NR2, —NH2, NRC(O)C1-6 alkyl, —NHC(O)C1-6 alkyl, an amino acid, a peptide, a tag, or a targeting moiety, where each R is independently hydrogen, an alkyl, an alkenyl, an alkynyl, a cycloalkyl, an aryl, a heteroaryl, a heterocyclyl, an arylalkyl, a peptide, a targeting moiety, or a tag;
- and wherein PG2 is a protecting group for protection of a carboxylic acid;
- or (ii) a parallel coiled-coil structure of formula
- wherein:
- each and each is independently absent or a modified or unmodified amino acid residue or analogue thereof, with the proviso that at least seven contiguous amino acid residues/analogues are present in each coil, wherein
- a, b, c, d, e, f, g, a′, b′, c′, d′, e′, f, and g′ indicate the location of the amino acid residues/analogues within the coiled-coil structure and
- each amino acid residue is a modified or unmodified amino acid selected from the group consisting of cysteine, homocysteine, selenocysteine, leucine, isoleucine, hexafluoroleucine, valine, hexafluorovaline, allylglycine, threonine, and analogues of each of the preceding residues;
- each is absent or a covalent linker (Linker) between two amino acid residues/analogues, wherein:
- each Linker E is independently a linker between a g* amino acid residue and an e′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the g* amino acid residue and the Cα position of the e′* amino acid residue is 10-25 Å;
- each Linker F is independently a linker between a d* amino acid residue and a d′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the d* amino acid residue and the Cα position of the d′* amino acid residue is 5-15 Å;
- each Linker G is independently a linker between an a* amino acid residue and an a′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the a* amino acid residue and the Cα position of the a′* amino acid residue is 5-15 Å;
- each Linker H is independently a linker between an e* amino acid residue and a g′* amino acid residue, wherein the length of the linker is such that the spatial distance between the Cα position of the e* amino acid residue and the Cα position of the g′* amino acid residue is 10-25 Å;
- and
- at least one Linker E or Linker H is present;
- and
- each is a point of attachment from a terminal nitrogen to H, —PG1, —C(O)R, —C(O)NR2, —C(O)NH2, —R, —C(O)OR, an amino acid, a peptide, a tag, or a targeting moiety, where each R is independently hydrogen, an alkyl, an alkenyl, an alkynyl, a cycloalkyl, an aryl, a heteroaryl, a heterocyclyl, an arylalkyl, a peptide, a targeting moiety, or a tag;
- and wherein PG1 is a protecting group for protection of an amine;
- and
- each is a point of attachment from a terminal carbonyl to H, —OPG2, —NPG2, —OR, —OH, —NR2, —NH2, NRC(O)C1-6 alkyl, —NHC(O)C1-6 alkyl, an amino acid, a peptide, a tag, or a targeting moiety, where each R is independently hydrogen, an alkyl, an alkenyl, an alkynyl, a cycloalkyl, an aryl, a heteroaryl, a heterocyclyl, an arylalkyl, a peptide, a targeting moiety, or a tag;
- and wherein PG2 is a protecting group for protection of a carboxylic acid.
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Dependencies are inferred from the claim text.