Treatment Determination and Impact Analysis
AssigneeExpanse Bioinformatics, Inc.
InventorsAndrew A. Kenedy, Charles A. Eldering
Life of this patent
Estimating the term…
Abstract
A method, software, database and system for determining an optimal treatment for an illness in an individual and for determining the impact (e.g., side effects and intended benefits) of the treatment in the individual are presented in which an attribute profile of the individual containing genetic and non-genetic attributes is compared against a database containing combinations genetic and non-genetic attributes that are statistically associated with successful treatment of the illness in other individuals.
Claims20
A computer-implemented method comprising:
- discovering, via processor-based statistical testing on a first attribute profile database, a set of core single nucleotide polymorphism (SNP) attributes that are statistically associated above a first threshold with a non-monogenic health attribute, wherein the first attribute profile database is associated with a population of individuals and contains SNP attributes and behavioral phenotype attributes;
- discovering, via processor-based statistical testing on the first attribute profile database, a set of behavioral phenotype attributes that are statistically associated above a second threshold with the non-monogenic health attribute and statistically associated above a third threshold with the set of core SNP attributes;
- receiving a query that is representative of the non-monogenic health attribute with respect to an individual;
- accessing a second attribute profile database associated with the individual, the second attribute profile database comprising SNP attributes and behavioral phenotype attributes associated with the individual;
- calculating, based on the second attribute profile database, a genetic risk associated with the non-monogenic health attribute, wherein the genetic risk is determined at least in part based on a degree of overlap between the SNP attributes of the individual and the set of core SNP attributes;
- identifying, based on the genetic risk, a reportable set of behavioral phenotype attributes from the set of behavioral phenotype attributes that are statistically associated above a fourth threshold with the non-monogenic health attribute, wherein the reportable set of behavioral phenotype attributes indicate behaviors that, when modified, have an observable statistical correlation with a propensity of the individual to exhibit a non-monogenic health condition associated with the non-monogenic health attribute;
- and
- transmitting, in response to the query, the reportable set of behavioral phenotype attributes as modifiable attributes related to the non-monogenic health condition.
An article of manufacture including a non-transitory computer-readable medium, having stored thereon program instructions that, upon execution by a computing device, cause the computing device to perform operations comprising:
- discovering, via processor-based statistical testing on a first attribute profile database, a set of core single nucleotide polymorphism (SNP) attributes that are statistically associated above a first threshold with a non-monogenic health attribute, wherein the first attribute profile database is associated with a population of individuals and contains SNP attributes and behavioral phenotype attributes;
- discovering, via processor-based statistical testing on the first attribute profile database, a set of behavioral phenotype attributes that are statistically associated above a second threshold with the non-monogenic health attribute and statistically associated above a third threshold with the set of core SNP attributes;
- receiving a query that is representative of the non-monogenic health attribute with respect to an individual;
- accessing a second attribute profile database associated with the individual, the second attribute profile database comprising SNP attributes and behavioral phenotype attributes associated with the individual;
- calculating, based on the second attribute profile database, a genetic risk associated with the non-monogenic health attribute, wherein the genetic risk is determined at least in part based on a degree of overlap between the SNP attributes of the individual and the set of core SNP attributes;
- identifying, based on the genetic risk, a reportable set of behavioral phenotype attributes from the set of behavioral phenotype attributes that are statistically associated above a fourth threshold with the non-monogenic health attribute, wherein the reportable set of behavioral phenotype attributes indicate behaviors that, when modified, have an observable statistical correlation with a propensity of the individual to exhibit a non-monogenic health condition associated with the non-monogenic health attribute;
- and
- transmitting, in response to the query, the reportable set of behavioral phenotype attributes as modifiable attributes related to the non-monogenic health condition.
A computer-implemented method comprising:
- receiving a query that is representative of a non-monogenic health attribute with respect to an individual, wherein a set of core single nucleotide polymorphism (SNP) attributes are statistically associated above a first threshold with the non-monogenic health attribute, and wherein a set of behavioral phenotype attributes are statistically associated above a second threshold with the non-monogenic health attribute and statistically associated above a third threshold with the set of core SNP attributes;
- accessing an attribute profile database associated with the individual, the attribute profile database comprising SNP attributes and behavioral phenotype attributes associated with the individual;
- calculating, based on the attribute profile database, a genetic risk associated with the non-monogenic health attribute, wherein the genetic risk is determined at least in part based on a degree of overlap between the SNP attributes of the individual and the set of core SNP attributes;
- identifying, based on the genetic risk, a reportable set of behavioral phenotype attributes from the set of behavioral phenotype attributes that are statistically associated above a fourth threshold with the non-monogenic health attribute;
- and
- transmitting, in response to the query, the reportable set of behavioral phenotype attributes as modifiable attributes related to a non-monogenic health condition associated with the non-monogenic health attribute.
Dependencies are inferred from the claim text.