Systems and methods for modeling a protein parameter for understanding protein interactions and generating an energy map

A system for modeling a three-dimensional protein structure, the system comprising:

• a processor;
• and
• a non-transitory computer-readable storage medium comprising programming instructions that are configured to cause the processor to:
• receive a primary amino acid sequence of a three-dimensional protein;
• translate the primary amino acid sequence to a first vector, wherein the first vector comprises a unique numerical descriptor value corresponding to each amino acid residue in the primary amino acid sequence;
• determine a per-residue conformation index for each amino acid residue in the primary amino acid sequence;
• determine a vector set for each amino acid residue in the primary amino acid sequence, wherein the vector set comprises a plurality per-residue interaction factors corresponding to a plurality of conformation indexes for that amino acid residue;
• and
• use the per-residue interaction vector set to generate a multi-dimensional matrix for the three-dimensional protein structure.

A method for modeling a three-dimensional protein structure, the method comprising:

• receiving a primary amino acid sequence of a three-dimensional protein;
• translating the primary amino acid sequence to a first vector, wherein the first vector comprises a unique numerical descriptor value corresponding to each amino acid residue in the primary amino acid sequence;
• determining a per-residue conformation index for each amino acid residue in the primary amino acid sequence;
• determining a vector set for each amino acid residue in the primary amino acid sequence, wherein the vector set comprises a plurality per-residue interaction factors corresponding to a plurality of conformation indexes for that amino acid residue;
• using the per-residue interaction vector set to generate a multi-dimensional matrix for the three-dimensional protein structure;
• and
• using the multi-dimensional matrix to determine a structure of the three-dimensional protein that has enhanced stability.