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US 2019/0169181 A1Published application
Fumagillol compounds and methods of making and using same
AssigneeZafgen, Inc.
InventorsRobert Zahler, James E. Vath
Life of this patent
Estimating the term…
Abstract
Disclosed herein, in part, are fumagillol compounds and methods of use in treating medical disorders, such as obesity. Pharmaceutical compositions and methods of making fumagillol compounds are provided. The compounds are contemplated to have activity against methionyl aminopeptidase 2.
Claims32
A compound represented by Formula I:
- wherein:
- is a single or double bond;
- R1 is selected from the group consisting of hydrogen and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one, two, or more substituents each independently selected from the group consisting of halogen, cyano, hydroxyl, and N(RbRc);
- L is selected from the group consisting of a bond and —C(RL1RL2)—;
- A is a 5- or 6-membered monocyclic heteroaryl ring having one, two, or three heteroatoms each independently selected from O, S, or N;
- wherein A may be optionally substituted on an available carbon by a substituent independently selected for each occurrence from the group consisting of halogen, hydroxyl, C1-6alkyl, C1-6alkoxy, C3-6cycloalkyl, phenyl, heterocyclyl, oxo, and —N(Rb)(Rc);
- wherein C1-6alkyl, C1-6alkoxy, or C3-6cycloalkyl may optionally be substituted by one, two, three or more substituents each independently selected from the group consisting of halogen, cyano, hydroxyl, and —N(Rb)(Rc), and wherein A may be optionally substituted on an available nitrogen by Rh;
- RL1 and RL2 are each independently selected from the group consisting of hydrogen, halogen, hydroxyl, C1-6alkyl, C3-6cycloalkyl, and C1-6alkoxy;
- wherein C1-6alkyl, C3-6cycloalkyl, and C1-6alkoxy may optionally be substituted by one or more halogen atoms or a group selected from cyano or hydroxyl;
- Ra, Rb, and Rc are each independently selected, for each occurrence, from the group consisting of hydrogen and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one or more substituents selected from the group consisting of halogen, cyano, oxo, and hydroxyl;
- or Rb and Rc may form, together with the nitrogen to which they are attached, a 4-6 membered heterocycle;
- Rh is independently selected for each occurrence from the group consisting of hydrogen, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-6cycloalkyl, C1-6alkyl-S(O)2—, and C1-6alkoxycarbonyl-, wherein C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-6cycloalkyl, C1-6alkyl-S(O)2—, and C1-6alkylcarbonyl- may optionally be substituted by one or more substituents selected from RP;
- RP is independently selected, for each occurrence, from the group consisting of halogen, hydroxyl, cyano, C1-6alkoxy, and heterocyclyl;
- wherein heterocyclyl has one, two or three heteroatoms each independently selected from the group consisting of O, NR′ (wherein R′ is H or C1-3alkyl) and S(O)w (wherein w is 0, 1, or 2);
- wherein heterocyclyl may optionally be substituted by one, two or three substituents each independent selected from the group consisting of halogen, hydroxyl, and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one, two or three halogens;
- or a pharmaceutically acceptable salt, stereoisomer, ester, or prodrug thereof.
16 more elements
A compound represented by:
- wherein:
- is a single or double bond;
- R1 is selected from the group consisting of hydrogen and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one, two, or more substituents each independently selected from the group consisting of halogen, cyano, hydroxyl, and N(RbRc);
- L is selected from the group consisting of a bond and —C(RL1RL2)—;
- A is selected from the group consisting of:
- wherein
- Rhh is hydrogen, C1-6alkyl or —C1-3alkyl-heterocyclyl, wherein heterocycyl may optionally be substituted by a substituent selected from the group consisting of C1-3alkyl (optionally substituted by one, two, or three halogens), halogen, and hydroxyl;
- R99 is heterocyclyl;
- RL1 and RL2 are each independently selected from the group consisting of hydrogen, halogen, hydroxyl, C1-6alkyl, C3-6cycloalkyl, and C1-6alkoxy;
- wherein C1-6alkyl, C3-6cycloalkyl, and C1-6alkoxy may optionally be substituted by one or more halogen atoms or a group selected from cyano or hydroxyl;
- Ra, Rb, and Rc are each independently selected, for each occurrence, from the group consisting of hydrogen and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one or more substituents selected from the group consisting of halogen, cyano, oxo, and hydroxyl;
- or
- Rb and Rc may form, together with the nitrogen to which they are attached, a 4-6 membered heterocycle;
- Rh is independently selected for each occurrence from the group consisting of hydrogen, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-6cycloalkyl, C1-6alkyl-S(O)2—, and C1-6alkoxycarbonyl-, wherein C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-6cycloalkyl, C1-6alkyl-S(O)2—, and C1-6alkylcarbonyl-may optionally be substituted by one or more substituents selected from RP;
- RP is independently selected, for each occurrence, from the group consisting of halogen, hydroxyl, cyano, C1-6alkoxy, and heterocyclyl;
- wherein heterocyclyl has one, two or three heteroatoms each independently selected from the group consisting of O, NR′ (wherein R′ is H or C1-3alkyl) and S(O)w (wherein w is 0, 1, or 2);
- wherein heterocyclyl may optionally be substituted by one, two or three substituents each independent selected from the group consisting of halogen, hydroxyl, and C1-6alkyl;
- wherein C1-6alkyl may optionally be substituted by one, two or three halogens;
- or a pharmaceutically acceptable salt, stereoisomer, ester, or prodrug thereof.
18 more elements
A compound selected from the group consisting of:
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(5-amino-1,3,4-oxadiazol-2-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(5-(methylamino)-1,3,4-oxadiazol-2-yl)propyl)carbamate;
- (3R,4S,5 S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-2-methyl-1-(5-(methylamino)-1,3,4-oxadiazol-2-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(1H-imidazol-2-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((R)-1-methylpyrrolidin-2-yl)methyl)-1H-imidazol-2-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((S)-1-methylpyrrolidin-2-yl)methyl)-1H-imidazol-2-yl)propyl)carbamate;
- (3R,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-2-methyl-1-(5-(methylamino)-1,3,4-thiadiazol-2-yl)propyl)carbamate;
- (3R,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(5-(methylamino)-1,3,4-thiadiazol-2-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(4H-1,2,4-triazol-3-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-2-methyl-1-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-2-methyl-1-(1-(((S)-1-methylpyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((R)-1-methylpyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((S)-1-methylpyrrolidin-2-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((S)-1-methylpyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((R)-1-methylpyrrolidin-2-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(2-morpholinoethyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(1-(((S)-1-(2,2-difluoroethyl)pyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(1-(((R)-1-(2,2-difluoroethyl)pyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(4-oxo-1,4-dihydropyridin-2-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1H-1,2,3-triazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((S)-1-methylpyrrolidin-3-yl)methyl)-1H-pyrazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(1-(((R)-1-methylpyrrolidin-3-yl)methyl)-1H-pyrazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((S)-2-methyl-1-(2-methyl-1-(((S)-1-methylpyrrolidin-3-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(6-(3,3-difluoroazetidin-1-yl)pyridin-3-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-2-methyl-1-(6-morpholinopyridin-3-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-3-methyl-1-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)propan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-3-methyl-1-(5-oxo-2,5-dihydro-1,2,4-oxadiazol-3-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-3-methyl-1-(4H-1,2,4-triazol-3-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-1-(5-amino-1,3,4-oxadiazol-2-yl)-3-methylbutan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-3-methyl-1-(5-(methylamino)-1,3,4-oxadiazol-2-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-3-methyl-1-(5-(methylamino)-1,3,4-thiadiazol-2-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-3-methyl-1-(5-(methylamino)-1,3,4-thiadiazol-2-yl)butan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((R)-1-(5-amino-1,3,4-thiadiazol-2-yl)-3-methylbutan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(5-amino-1,3,4-thiadiazol-2-yl)-3-methylbutan-2-yl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl (2-methyl-2-(1-(((R)-1-methylpyrrolidin-2-yl)methyl)-1H-imidazol-4-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl (2-methyl-2-(4H-1,2,4-triazol-3-yl)propyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-enyl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((S)-1-(1-isobutyl-1H-imidazol-4-yl)-2-methylpropyl)(methyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl ((S)-1-(6-(azetidin-1-yl)pyridin-3-yl)-2-methylpropyl)carbamate;
- (3R,4S,5S,6R)-5-methoxy-4-((2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl)-1-oxaspiro[2.5]octan-6-yl((S)-1-(1-isobutyl-1H-imidazol-4-yl)-2-methylpropyl)carbamate;
- and a pharmaceutically acceptable salt or stereoisomer thereof.
40 more elements
Dependencies are inferred from the claim text.