Boronic acid derivatives and therapeutic uses thereof
AssigneeRempex Pharmaceuticals, Inc.
InventorsRaja K. Reddy, Tomasz Glinka, Maxim Totrov, Scott Hecker
Life of this patent
Estimating the term…
Abstract
Disclosed herein are antimicrobial compounds compositions, pharmaceutical compositions, the use and preparation thereof. Some embodiments relate to boronic acid derivatives and their use as therapeutic agents.
Claims67
A compound having the structure of Formula (I):
- or pharmaceutically acceptable salts thereof, wherein:
- A is selected from the group consisting of C3-10 carbocyclyl, C6-10 aryl, 5-10 membered heteroaryl, and 5-10 membered heterocyclyl;
- Xa is —C(ReRf)—, —O—, —S—, —S(O)—, —S(O)2—, or —NR1—;
- Ra is selected from the group consisting of —H, halogen, optionally substituted —C1-6 alkyl, —OH, —C(O)OR, optionally substituted —O—C1-6 alkyl, —NR1R2, —N(OR3)R2, optionally substituted —S—C1-6 alkyl, —C(O)NR1R2, —S(O)2NR1R2, CN, optionally substituted —S(O)—C1-6 alkyl, optionally substituted —S(O)2—C1-6 alkyl, and a carboxylic acid isoster;
- Rb is selected from the group consisting of —H, halogen, optionally substituted —C1-6 alkyl, —OH, —C(O)OR, optionally substituted —O—C1-6 alkyl, —NR1R2, —N(OR3)R2, optionally substituted —S—C1-6 alkyl, —C(O)NR1R2, —S(O)2NR1R2, —CN, optionally substituted —S(O)—C1-6 alkyl, optionally substituted —S(O)2—C1-6 alkyl, and a carboxylic acid isoster, and
- Rc is selected from the group consisting of—OH, optionally substituted —O—C1-6 alkyl, —NR1R2, and —N(OR3)R2, or
- Rb and Rc together with intervening atoms form a 5-8 membered boron ester ring, optionally comprising additional 1-3 heteroatoms selected from Oxygen (O), Sulfur (S) or Nitrogen (N);
- Rd is selected from the group consisting of —OH, optionally substituted —O—C1-6 alkyl, —NR1R2, and —N(OR3)R2, or
- when Rb and Rc do not together form a 5-8 membered boron ester ring, then optionally Rc and Rd together with intervening atoms form a 5-15 membered boron ester or amide ring, optionally comprising additional 1-3 heteroatoms selected from O, S, and N;
- Y is selected from the group consisting of —S—, —S(O)—, —S(O)2—, —O—, —CH2— and —NR2—;
- G is selected from the group consisting of —NR1R2, —N3, —C(O)NR1R2, —S(O)2NR1R2, —SR3, —OR3, —CH2NR1C(O)R5, —C(═NOR3)—X, C(═NOR3)—Z, —C(O)OR3, —S(O)2R3, —C(O)NR1(OR3), —NR1(OR3), —NR1C(O)R5, —NR1C(O)NR2R1a, —NR1C(O)OR3, —NR1S(O)2R3, —NR1S(O)2NR2R1a, NR1NR2R1a, —C(O)NR1NR2R1a, —S(O)2NR1NR2R1a, —C(═NR1)R5, C(═NR1)NR2R1a, —NR1CR5(═NR2), —NR1C(═NR2)NR1aR2a, optionally substituted C1-10 alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 carbocyclyl, optionally substituted 5-10 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- Re and Rf are each independently selected from the group consisting of —H, C1-6 alkyl, —OH, —OC1-6alkyl, —SC1-6alkyl, C3-10cycloalkyl, C2-10alkenyl, C2-10alkynyl, —NR1C(O)R5, —NR1S(O)2R3, —C(O)R5, —C(O)OR3, alkylaryl, optionally substituted C6-10 aryl, optionally substituted —O—C6-10aryl, —CN, optionally substituted 5-10 membered heteroaryl, optionally substituted —O-heteroaryl, optionally substituted 3-10 membered heterocyclyl, —S(O)R3, —S(O)2R3, —R1—O—C(O)OR3, or Re and Rf together with the carbon to which they are attached form a C3-8 cycloalkyl or a 4-8 membered heterocyclyl;
- R7 is present 1 to 5 times and each R7 is independently selected from the group consisting of —H, —OH, halogen, —CF3, C1-C6 alkenyl, C1-C6 alkynyl, C1-C6 heteroalkyl, C3-C7 carbocyclyl, 5-10 membered heterocyclyl, aryl, 5-10 membered heteroaryl, cyano, C1-C6 alkoxy(C1-C6)alkyl, aryloxy, sulfhydryl (mercapto), and —(CH2)m—Y′—(CH2)pM′;
- m and p are independently 0 to 3;
- Y′ is selected from the group consisting of —S—, —S(O)—, —S(O)2—, —O—, —CR5R6—, and —NR1—;
- M′ is selected from the group consisting of —C(O)NR1R2;
- —C(O)NR1OR3;
- —NR1C(O)R5;
- —NR1C(O)NR2R1a;
- NR1C(O)OR3;
- —NR1S(O)2R3;
- NR1S(O)2NR2R1a;
- —C(NR1)R5;
- C(═NR1)NR2R1a;
- NR1CR5(═NR2);
- —NR1C(═NR2)NR1aR2a;
- C1-4 alkyl optionally substituted with 0-2 substituents selected from the group consisting, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- C3-10 cycloalkyl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- C6-10 aryl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- 5 to 10 membered heteroaryl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- and 4 to 10 membered heterocyclyl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- X is hydrogen or optionally substituted C1-9alkyl;
- Z is selected from optionally substituted C3-8 cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl;
- R is selected from the group consisting of —H, —C1-9alkyl, —CR5R6OC(O)C1-9alkyl, —CR5R6OC(O)OC1-9alkyl, and
- each R1, R2, R1a and Rea are independently selected from the group consisting of —H, optionally substituted —C1-10alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- R3 is hydrogen, optionally substituted C1-10alkyl, -optionally substituted C1-10alkyl-COOOH, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- each R5, R6, R8 and R9 are independently selected from the group consisting of —H, —OH, -optionally substituted alkoxyl, optionally substituted —C1-10alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- each n is independently 0-3.
The compound of any one of claims 1 to 6, wherein Rb is selected from the group consisting of —H, halogen, optionally substituted —C1-6 alkyl, —OH, —C(O)OR, optionally substituted —O—C1-6 alkyl, —NR1R2, —N(OR3)R2, optionally substituted —S—C1-6 alkyl, —C(O)NR1R2, —S(O)2NR1R2, —CN, optionally substituted —S(O)—C1-6 alkyl, and optionally substituted —S(O)2—C1-6 alkyl.
A chemical complex, comprising a complex between a monosaccharide or monosaccharide derivative and a compound having the structure of formula (I):
- or pharmaceutically acceptable salts thereof, wherein:
- A is selected from the group consisting of C3-10 carbocyclyl, C6-10 aryl, 5-10 membered heteroaryl, and 5-10 membered heterocyclyl;
- Xa is —C(ReRf)—, —O—, —S—, —S(O)—, —S(O)2—, or —NR1—;
- Ra is selected from the group consisting of —H, halogen, optionally substituted —C1-6 alkyl, —OH, —C(O)OR, optionally substituted —O—C1-6 alkyl, —NR1R2, —N(OR3)R2, optionally substituted —S—C1-6 alkyl, —C(O)NR1R2, —S(O)2NR1R2, CN, optionally substituted —S(O)—C1-6 alkyl, optionally substituted —S(O)2—C1-6 alkyl, and a carboxylic acid isoster;
- Rb is selected from the group consisting of —H, halogen, optionally substituted —C1-6 alkyl, —OH, —C(O)OR, optionally substituted —O—C1-6 alkyl, —NR1R2, —N(OR3)R2, optionally substituted —S—C1-6 alkyl, —C(O)NR1R2, —S(O)2NR1R2, —CN, optionally substituted —S(O)—C1-6 alkyl, optionally substituted —S(O)2—C1-6 alkyl, and a carboxylic acid isoster, and
- Rc is selected from the group consisting of —OH, optionally substituted —O—C1-6 alkyl, —NR1R2, and —N(OR3)R2, or
- Rb and Rc together with intervening atoms form a 5-8 membered boron ester ring, optionally comprising additional 1-3 heteroatoms selected from Oxygen (O), Sulfur (S) or Nitrogen (N);
- Rd is selected from the group consisting of —OH, optionally substituted —O—C1-6 alkyl, —NR1R2, and —N(OR3)R2, or
- when Rb and Rc do not together form a 5-8 membered boron ester ring, then optionally Rc and Rd together with intervening atoms form a 5-15 membered boron ester or amide ring, optionally comprising additional 1-3 heteroatoms selected from O, S, and N;
- Y is selected from the group consisting of —S—, —S(O)—, —S(O)2—, —O—, —CH2— and —NR2—;
- G is selected from the group consisting of —NR1R2, —N3, —C(O)NR1R2, —S(O)2NR1R2, —SR3, —OR3, —CH2NR1C(O)R5, —C(═NOR3)—X, C(═NOR3)—Z, —C(O)OR3, —S(O)2R3, —C(O)NR1(OR3), —NR1(OR3), —NR1C(O)R5, —NR1C(O)NR2R1a, —NR1C(O)OR3, —NR1S(O)2R3, —NR1S(O)2NR2R1a, NR1NR2R1a, —C(O)NR1NR2R1a, —S(O)2NR1NR2R1a, —C(═NR1)R5, C(═NR1)NR2R1a, —NR1CR5(═NR2), —NR1C(═NR2)NR1aR2a, optionally substituted C1-10 alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 carbocyclyl, optionally substituted 5-10 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- Re and Rf are each independently selected from the group consisting of —H, C1-6 alkyl, —OH, —OC1-6alkyl, —SC1-6alkyl, C3-10cycloalkyl, C2-10alkenyl, C2-10alkynyl, —NR1C(O)R5, —NR1S(O)2R3, —C(O)R5, —C(O)OR3, alkylaryl, optionally substituted C6-10 aryl, optionally substituted —O—C6-10aryl, —CN, optionally substituted 5-10 membered heteroaryl, optionally substituted —O-heteroaryl, optionally substituted 3-10 membered heterocyclyl, —S(O)R3, —S(O)2R3, —R1—O—C(O)OR3, or Re and Rf together with the carbon to which they are attached form a C3-8 cycloalkyl or a 4-8 membered heterocyclyl;
- R7 is present 1 to 5 times and each R7 is independently selected from the group consisitng of —H, —OH, halogen, —CF3, C1-C6 alkenyl, C1-C6 alkynyl, C1-C6 heteroalkyl, C3-C7 carbocyclyl, 5-10 membered heterocyclyl, aryl, 5-10 membered heteroaryl, cyano, C1-C6 alkoxy(C1-C6)alkyl, aryloxy, sulfhydryl (mercapto), and —(CH2)m—Y′—(CH2)pM′;
- m and p are independently 0 to 3;
- Y′ is selected from the group consisting of —S—, —S(O)—, —S(O)2—, —O—, —CR5R6—, and —NR1—;
- M′ is selected from the group consisting of —C(O)NR1R2;
- —C(O)NR1OR3;
- —NR1C(O)R5;
- —NR1C(O)NR2R1a;
- —NR1C(O)OR3;
- —NR1S(O)2R3;
- —NR1S(O)2NR2R1a;
- —C(═NR1)R5;
- —C(═NR1)NR2R1a;
- —NR1CR5(═NR2);
- —NR1C(═NR2)NR1aR2a;
- C1-4 alkyl optionally substituted with 0-2 substituents selected from the group consisting, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- C3-10 cycloalkyl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- C6-10 aryl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- 5 to 10 membered heteroaryl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- and 4 to 10 membered heterocyclyl optionally substituted with 0-2 substituents selected from the group consisting of C1-4 alkyl, —OR3, —NR1R2, halogen, —C(O)NR1R2, and —NR1C(O)R5;
- X is hydrogen or optionally substituted C1-9alkyl;
- Z is selected from optionally substituted C3-8 cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl;
- R is selected from the group consisting of —H, —C1-9alkyl, —CR5R6OC(O)C1-9alkyl, —CR5R6OC(O)OC1-9alkyl, and
- each R1, R2, R1a and R2a are independently selected from the group consisting of —H, optionally substituted —C1-10alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- R3 is hydrogen, optionally substituted C1-10alkyl, -optionally substituted C1-10alkyl-COOH, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- each R5, R6, R8 and R9 are independently selected from the group consisting of —H, —OH, -optionally substituted alkoxyl, optionally substituted —C1-10alkyl, optionally substituted C2-10alkenyl, optionally substituted C2-10alkynyl, optionally substituted C3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted C6-10aryl, and optionally substituted 5-10 membered heteroaryl;
- each n is independently 0-3.
Dependencies are inferred from the claim text.