Minimization of epigenetic surprisal data of epigenetic data within a time series
AssigneeInternational Business Machines Corporation
InventorsRobert R. Friedlander, James R. Kraemer
Life of this patent
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Abstract
A method, computer program product and system of minimizing epigenetic surprisal data either by comparing epigenetic surprisal data to a fixed baseline epigenetic data, so that all of the comparisons were made to the same baseline epigenetic data or by comparing epigenetic surprisal data to a rolling baseline of epigenetic surprisal data—that is, after each comparison the baseline is changed to the data from the time point which had been compared previously.
Claims46
A method of minimizing epigenetic surprisal data comprising:
- a computer receiving a request for an epigenetic time series analysis comprising at least an indication of a baseline epigenetic surprisal data and a period of time for the epigenetic time series analysis;
- the computer retrieving a baseline epigenetic surprisal data and epigenetic surprisal data for at least one time point within the time period from a repository;
- and
- the computer comparing the at least one epigenetic surprisal data within the time period to the baseline epigenetic surprisal data, producing at least one epigenetic modification difference,
- the computer storing the at least one epigenetic modification difference in a repository;
- and
- repeating the method for all epigenetic surprisal data time points within the time period.
A method of minimizing epigenetic surprisal data comprising:
- a computer receiving a request for an epigenetic time series analysis comprising at least a period of time for the epigenetic time series analysis;
- the computer retrieving epigenetic data at time points within the time period from a repository;
- the computer designating a first epigenetic data at a time point within the time period as a baseline;
- the computer comparing the baseline to a next epigenetic data and storing the difference in a repository as epigenetic surprisal data;
- the computer designating the next epigenetic data from the comparison as the baseline, and
- the computer repeating the step of comparing and designating, until all epigenetic data in the time period have been compared.
A computer program product for minimizing epigenetic surprisal data, comprising:
- one or more computer-readable, tangible storage devices;
- program instructions, stored on at least one of the one or more storage devices, to receive a request for an epigenetic time series analysis comprising at least an indication of a baseline epigenetic surprisal data and a period of time for the epigenetic time series analysis;
- program instructions, stored on at least one of the one or more storage devices, to retrieve a baseline epigenetic surprisal data and epigenetic surprisal data for at least one time point within the time period from a repository;
- and
- program instructions, stored on at least one of the one or more storage devices, to compare the at least one epigenetic surprisal data within the time period to the baseline epigenetic surprisal data, producing at least one epigenetic modification difference;
- program instructions, stored on at least one of the one or more storage devices, to store the at least one epigenetic modification difference in a repository;
- and
- program instructions, stored on at least one of the one or more storage devices, to repeat the method for all epigenetic surprisal data time points within the time period.
A computer program product for minimizing epigenetic surprisal data, comprising:
- one or more computer-readable, tangible storage devices;
- program instructions, stored on at least one of the one or more storage devices, to a receive a request for an epigenetic time series analysis comprising at least a period of time for the epigenetic time series analysis;
- program instructions, stored on at least one of the one or more storage devices, to retrieve epigenetic data at time points within the time period from a repository;
- program instructions, stored on at least one of the one or more storage devices, to designate a first epigenetic data at a time point within the time period as a baseline;
- program instructions, stored on at least one of the one or more storage devices, to compare the baseline to a next epigenetic data and storing the difference in a repository as epigenetic surprisal data;
- program instructions, stored on at least one of the one or more storage devices, to designate the next epigenetic data from the comparison as the baseline, and
- the program instructions, stored on at least one of the one or more storage devices, to repeat the step of comparing and designating, until all epigenetic data in the time period have been compared.
A computer system for minimizing surprisal data comprising:
- one or more processors, one or more computer-readable memories and one or more computer-readable, tangible storage devices;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to receive a request for an epigenetic time series analysis comprising at least an indication of a baseline epigenetic surprisal data and a period of time for the epigenetic time series analysis;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to retrieve a baseline epigenetic surprisal data and epigenetic surprisal data for at least one time point within the time period from a repository;
- and
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to compare the at least one epigenetic surprisal data within the time period to the baseline epigenetic surprisal data, producing at least one epigenetic modification difference;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to store the at least one epigenetic modification difference in a repository;
- and
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to repeat the method for all epigenetic surprisal data time points within the time period.
A computer system for minimizing epigenetic surprisal data, comprising:
- one or more processors, one or more computer-readable memories and one or more computer-readable, tangible storage devices;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to a receive a request for an epigenetic time series analysis comprising at least a period of time for the epigenetic time series analysis;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to retrieve epigenetic data at time points within the time period from a repository;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to designate a first epigenetic data at a time point within the time period as a baseline;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to compare the baseline to a next epigenetic data and storing the difference in a repository as epigenetic surprisal data;
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to designate the next epigenetic data from the comparison as the baseline, and
- program instructions, stored on at least one of the one or more storage devices for execution by at least one of the one or more processors via at least one of the one or more memories, to repeat the step of comparing and designating, until all epigenetic data in the time period have been compared.
Dependencies are inferred from the claim text.