Nucleic acids for inducing expression of transcripts and proteins and methods for making and using them
AssigneeThe Regents of the University of California
InventorsSteven P. Briggs, Kiyoshi Tachikawa
Life of this patent
Estimating the term…
Abstract
The invention provides nucleic acids and polypeptides for enhanced expression of nucleic acids and proteins. In one aspect, the sequences serve as transcription and translation enhancers or stabilizers, and can be incorporated in expression constructs at or near the translation control elements. The invention provides methods of producing mRNA (transcripts) and proteins. The invention provides methods of discovering new enhancer elements.
Claims16
An isolated, purified, synthetic or recombinant nucleic acid for increased expression or increased stabilization of an mRNA (transcript) and/or polypeptide, wherein the nucleic acid comprises, or consists of:
- (a) a nucleotide sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% sequence identity, or more, or complete (100%) sequence identity, to 5′-atgggctataagaaatctaacaatccgttttctgat-3′ (SEQ ID NO:1),
- wherein the nucleic acid acts as an enhancer of transcription when it is operatively linked to or is in close proximity to a second nucleic acid sequence, or the nucleic acid acts as to stabilize the mRNA (transcript) and/or polypeptide;
- (b) the nucleic acid sequence of (a), wherein the transcription-enhanced second nucleic acid sequence comprises a protein-encoding sequence, a protein-encoding transcript or a protein-encoding gene;
- (c) the nucleic acid sequence of (a) or (b), wherein the nucleic acid is operatively linked to or is in close proximity to:
- a Shine-Dalgarno sequence (Shine-Dalgarno box);
- a Kozak sequence (Kozak consensus sequence);
- a transcription start site;
- a translational start site;
- a promoter;
- an enhancer;
- a splice site;
- and/or a ribosomal binding site;
- (d) the nucleic acid sequence of any of (a) to (c), wherein the close proximity is being within about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 or more nucleic acid residues;
- (e) the nucleic acid sequence of any of (a) to (d), wherein the nucleic acid sequence further comprises sequence encoding a protein localization signal;
- (f) the nucleic acid sequence of (e), wherein the protein localization signal comprises a FKDE or CFFKDEL motif, or a PFS or a VLTNENPFSDP or YKKSNNPFSD containing motif;
- (g) the nucleic acid sequence of any of (a) to (d), wherein the nucleic acid sequence further comprises a Shine-Dalgarno sequence (Shine-Dalgarno box);
- a Kozak sequence (Kozak consensus sequence);
- a transcription start site;
- a translational start site;
- a promoter;
- an enhancer;
- a splice site;
- and/or a ribosomal binding site;
- (h) the nucleic acid sequence of any of (a) to (g), wherein the nucleic acid sequence is inserted into a vector, a cloning vehicle, an expression cassette, an expression system, an expression vector, a cloning vector or a cloning vehicle, or a viral vector, a plasmid, a phage, a phagemid, a cosmid, a fosmid, a bacteriophage or an artificial chromosome, or a bacterial artificial chromosome (BAC), a plasmid, a bacteriophage P1-derived vector (PAC), a yeast artificial chromosome (YAC), or a mammalian artificial chromosome (MAC);
- or
- (i) the nucleic acid sequence of any of (a) to (h), wherein the nucleic acid sequence is about at least 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39 or 40 or more nucleic acid residues in length.
An isolated, purified, synthetic or recombinant polypeptide comprising an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% sequence identity, or more, or complete (100%) sequence identity, to MGYKKSNNPFSD (SEQ ID NO:2),
- wherein nucleic acid encoding the polypeptide acts as an enhancer of transcription when it is operatively linked to or is in close proximity to a second nucleic acid sequence, or, the polypeptide acts as a protein stabilization sequence or a protein localization signal;
- or
- (b) the polypeptide of (a), wherein the polypeptide comprises a protein localization signal;
- (c) the polypeptide of (a) or (b) further comprising an amino acid sequence encoding a protein localization signal;
- or
- (d) the polypeptide of (c), wherein the protein localization signal comprises a FKDE or CFFKDEL motif, or a PFS or a VLTNENPFSDP or YKKSNNPFSD containing motif.
(canceled)
Dependencies are inferred from the claim text.