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US 2010/0168388 A1Published application
Stabilized p53 peptides and uses thereof
AssigneesDana-Farber Cancer Institute, Inc., President and Fellows of Harvard College
InventorsFederico Bernal, Loren D. Walensky, Gregory L. Verdine, Stanley J. Korsmeyer, Susan Korsmeyer
Life of this patent
Estimating the term…
Abstract
Cross-linked peptides related to human p53 and bind to HMD2 or a family member of HDM2 useful for promoting apoptosis, e.g., in the treatment of and identifying therapeutic agents that binding to HMD2 or a family member of HDM2.
Claims39
A modified polypeptide of Formula (I),
- or a pharmaceutically acceptable salt thereof,
- wherein:
- each R1 and R2 are independently H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkylalkyl, heteroarylalkyl, or heterocyclylalkyl;
- each R3 is independently alkyl, alkenyl, alkynyl;
- [R4—K—R4′]n;
- each of which is substituted with 0-6 R5;
- R4 and R4′ are independently alkylene, alkenylene or alkynylene;
- each R5 is independently is halo, alkyl, OR6, N(R6)2, SR6, SORB, SO2R6, CO2R6, R6, a fluorescent moiety, or a radioisotope;
- K is independently O, S, SO, SO2, CO, CO2, CONR6 or
- each R6 is independently H, alkyl, or a therapeutic agent;
- n is an integer from 1-4;
- x is 2, 3, 4 or 6;
- y and w are independently integers from 0-100;
- z is an integer from 1-10;
- and
- each Xaa is independently an amino acid;
- wherein the modified polypeptide comprises at least 8 contiguous amino acids of human p53 or a variant thereof or a homologue of human p53 or a variant thereof except that:
- (a) within the 8 contiguous amino acids the side chains of at least one pair of amino acids separated by 3, 4 or 6 amino acids is replaced by the linking group R3 which connects the alpha carbons of the pair of amino acids as depicted in Formula I and (b) the alpha carbon of the first amino acid of the pair of amino acids is substituted with R1 as depicted in formula I and the alpha carbon of the second amino acid of the pair of amino acids is substituted with R2 as depicted in Formula I.
15 more elements
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21-24. (canceled)
-39. (canceled)
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A compound having the formula:
- R1 is the side chain of any amino acid other than Gln;
- R2 is —CH2OH [S];
- R3 is —CH2CH2C(O)NH2 [Q]
- R4 is the side chain of any amino acid other than Glu or Asp;
- R5 is —C(OH)CH3 [T];
- R6 is benzyl [F]
- R7 and R14 together are Rx;
- R8 is R4 is the side chain of any amino acid other than Glu or Asp;
- R9 is —CH2CH(CH3)2 [L];
- R10 is;
- R11 is the side chain of any amino acid other than Lys;
- R12 and R13 are —CH2CH(CH3)2 [L];
- R15 is —CH2CH2C(O)NH2 [Q];
- and
- R16 is —CH2C(O)NH2 [N].
- Rx is alkyl, alkenyl, alkynyl;
- [Rx1—K—Rx1]n;
- each of which is substituted with 0-6 Rx2;
- Rx1 and Rx1′ are independently alkyl, alkenyl, or alkynyl;
- Rx2 is halo, alkyl, ORx3, N(Rx3)2, SRx3, SORx3, SO2Rx3, CO2Rx3, Rx3, a fluorescent moiety, or a radioisotope;
- K is O, S, SO, SO2, CO, CO2, CONRx3, or
- R13 is H, alkyl or a therapeutic agent;
- and
- Rz and Rw are independently:
- H, hydroxyl, amide (NH2), an amino acid, 2 to 10 amino acids linked by peptide bonds;
- tat;
- and PEG.
24 more elements
45-58. (canceled)
A modified polypeptide of Formula (II),
- or a pharmaceutically acceptable salt thereof,
- wherein;
- each R1 and R2 are independently H or a C1 to C10 alkyl, alkenyl, alkynyl, arylalkyl, cycloalkylalkyl, heteroarylalkyl, or heterocyclylalkyl;
- R3 is alkylene, alkenylene or alkynylene, or [R4′-K-R4]n;
- each of which is substituted with 0-6 R5;
- R4 and R4′ are independently alkylene, alkenylene or alkynylene (e.g., each are independently a C1, C2, C3, C4, C5, C6, C7, C8, C9 or C10 alkylene, alkenylene or alkynylene);
- R5 is halo, alkyl, OR6, N(R6)2, SR6, SOR6, SO2R6, CO2R6, R6, a fluorescent moiety, or a radioisotope;
- K is O, S, SO, SO2, CO, CO2, CONR6, or
- aziridine, episulfide, diol, amino alcohol;
- R6 is H, alkyl, or a therapeutic agent;
- n is 2, 3, 4 or 6;
- x is an integer from 2-10;
- w and y are independently an integer from 0-100;
- z is an integer from 1-10 (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10);
- and
- each Xaa is independently an amino acid (e.g., one of the 20 naturally occurring amino acids or any naturally occurring non-naturally occurring amino acid);
- R7 is PEG, a tat protein, an affinity label, a targeting moiety, a fatty acid-derived acyl group, a biotin moiety, a fluorescent probe (e.g. fluorescein or rhodamine) linked via, e.g., a thiocarbamate or carbamate linkage;
- R8 is H, OH, NH2, NHR8a, NR8aR8b;
- wherein the polypeptide comprises at least 8 contiguous amino acids of SEQ ID NO:1 (human p53) or a variant thereof, SEQ ID NO:2 or a variant thereof, or another polypeptide sequence described herein except that:
- (a) within the 8 contiguous amino acids of SEQ ID NO:1 the side chains of at least one pair of amino acids separated by 3, 4 or 6 amino acids is replaced by the linking group, R3, which connects the alpha carbons of the pair of amino acids as depicted in formula I;
- and (b) the alpha carbon of the first of the pair of amino acids is substituted with R1 as depicted in Formula II and the alpha carbon of the second of the pair of amino acids is substituted with R2 as depicted in Formula II.
18 more elements
Dependencies are inferred from the claim text.