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US 2006/0052941 A1Published application
Crystal of bacterial core RNA polymerase and methods of use thereof
AssigneeAffinium Pharmaceuticals, Inc.
InventorsSeth Darst, Gongyi Zhang, Elizabeth Campbell, Leonid Minakin, Konstantin Severinov
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Abstract
A detailed three-dimensional structure for a bacterial core RNA polymerase is provided. Crystals of the bacterial core RNA polymerase are also included in the invention. The present invention further provides procedures for identifying agents that can inhibit bacterial proliferation through the use of rational drug design predicated on the crystals and crystallographic data disclosed.
Claims13
1-22. (canceled)
A crystallized polypeptide comprising:
- (a) at least one of the amino acid sequences set forth in SEQ ID NO:
- 1 or SEQ ID NO:
- 2 or SEQ ID NO:
- 3;
- or (b) an amino acid sequence that is substantially similar to at least one of the amino acid sequences set forth in SEQ ID NO:
- 1 or SEQ ID NO:
- 2 or SEQ ID NO:
- 3;
- and has at least one biological activity of a core RNA polymerase from Thermus aquaticus wherein the polypeptide of (a), (b) or (c) is in crystal form and wherein said crystallized polypeptide diffracts x-rays to a resolution of about 3.5 Å or better for the determination of the three-dimensional atomic coordinates of said core RNA polymerase.
6 more elements
Dependencies are inferred from the claim text.