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US 12,760,339 B2Granted
Production of odd chain fatty acid derivatives in recombinant microbial cells
AssigneeGenomatica, Inc.
InventorsGrace J. Lee, John Haliburton, Zhihao Hu, Andreas W. Schirmer, Kevin Holden
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Abstract
Recombinant microbial cells are provided which have been engineered to produce fatty acid derivatives having linear chains containing an odd number of carbon atoms by the fatty acid biosynthetic pathway. Also provided are methods of making odd chain fatty acid derivatives using the recombinant microbial cells, and compositions comprising odd chain fatty acid derivatives produced by such methods.
Claims20
A recombinant microbial cell comprising:
- (a) polynucleotides encoding polypeptides having enzymatic activity effective to produce an increased amount of propionyl-CoA in the recombinant microbial cell relative to the amount of propionyl-CoA produced in a parental microbial cell lacking or having a reduced amount of said enzymatic activity, wherein the polynucleotides encode
- (i) one or more of a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 40, 41, 42, or 43, wherein the polypeptide has (R)-citramalate synthase activity;
- a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 44 or 46 and 45 or 47, wherein the polypeptide has isopropylmalate isomerase activity;
- and a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 48, 49, or 50, wherein the polypeptide has beta-isopropylmalate dehydrogenase activity, and/or
- (ii) one or more of a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 20, 21, 22, 23, or 24, wherein the polypeptide has aspartokinase activity;
- a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 20, 21, 25, 26, or 27, wherein the polypeptide has homoserine dehydrogenase activity;
- a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 28, 29, 30, or 31, wherein the polypeptide has homoserine kinase activity;
- a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 32, 33, or 34, wherein the polypeptide has threonine synthase activity;
- and a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 35, 36, 37, 38, or 39, wherein the polypeptide has threonine deaminase activity,
- (b) a polynucleotide encoding a polypeptide having β-ketoacyl-ACP synthase activity that utilizes propionyl-CoA as a substrate, wherein the polypeptide having β-ketoacyl-ACP synthase activity comprises one or more sequence motif selected from SEQ ID NO:
- 14, 15, 16, 17, 18, or 19, and
- (c) a polynucleotide encoding a polypeptide comprising at least 85% sequence identity to SEQ ID NOs:
- 64, 65, 66, 67, 68, 69, 70, 71, or 72, wherein the polypeptide has thioesterase enzyme activity,
- wherein the recombinant microbial cell produces a fatty acid derivative composition comprising odd chain and even chain fatty acid derivatives when cultured in the presence of a carbon source under conditions effective to express the polynucleotides according to (a), (b), and (c), and
- wherein at least 10% of the fatty acid derivatives in the fatty acid derivative composition are odd chain fatty acid derivatives.
20 more elements
Dependencies are inferred from the claim text.