Systems and methods for generating automated software workflow for biological testing

A computer program product comprising instructions encoded on a non-transitory machine readable medium, the instructions being executable on one or more processors to implement processing comprising:

• setup manager processing to ascertain the nature of an experimental workflow including storing associated parameter settings and target information, and automatically generating plate setup information;
• wherein:
• the associated parameter settings include thermocycling parameters for a particular experiment to be performed using a PCR instrument,
• the target information is associated with a specific chemistry kit for a particular target molecule associated with the particular experiment,
• automatically generating the plate setup information includes calculating an optimal volume for each component and determining an optimal layout of wet chemistry components within a test fixture of the PCR instrument based on a set of rules that specify, for the particular PCR experiment:
• a number and distribution of samples and positive and negative controls in a plate configuration;
• pipette manager processing to provide user instructions on how to physically deploy wet chemistry components within the test fixture of the PCR instrument;
• and
• run manager processing to control the PCR instrument in performing an experimental workflow, including automatically sending a control instruction and associated parameter settings including the plate setup information to the PCR instrument to perform the particular experiment, based on the determined associated parameter settings, upon the wet chemistry components within the test fixture wherein the test fixture is installed within the PCR instrument.