Use of oligopyridylamides to inhibit mutant p53 amyloid formation and restore its tumor suppressor function
AssigneesNew York University, New York University in Abu Dhabi Corporation
InventorsSunil Kumar, Andrew D. Hamilton, Mazin Magzoub, Sarah Hassan
Life of this patent
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Abstract
The invention relates to oligopyridylamide alpha-helix mimetic compounds and their use to inhibit p53 aggregation and restore its tumor suppressor function for treating diseases, e.g., cancers, associated with p53 mutations, e.g., R248W p53 mutation.
Claims20
A method of inhibiting aggregation of a p53 protein comprising contacting said p53 protein with an effective amount of a compound of formula (I):
- wherein Ra is independently selected at each occurrence from hydrogen, C1-C12 hydrocarbons, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- and —N(R*)2;
- X is independently at each occurrence selected from —O—;
- —S—;
- —NH—;
- —NR*—;
- and C(R*)2;
- Y is independently at each occurrence selected from —O—;
- —S—;
- —NH—;
- and —NR*—;
- R1 is selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- R2 is independently at each occurrence selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- R3 is selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- A is selected from hydrogen, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2;
- C1-C8 perfluorocarbon;
- an aliphatic C1-C12 hydrocarbon;
- an aromatic C1-C12 hydrocarbon;
- and a C1-C12 heteroaryl;
- B is selected from hydrogen, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2;
- C1-C8 perfluorocarbon;
- an aliphatic C1-C12 hydrocarbon;
- an aromatic C1-C12 hydrocarbon;
- and a C1-C12 heteroaryl;
- R* is independently selected at each occurrence from hydrogen or C1-C12 hydrocarbons each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S and combinations thereof;
- and
- n is an integer from 0 to 2;
- with the proviso that (i) when n is 0, and Y is O, R1 and R3 are not both —CH2CO2H;
- (ii) when n is 1, Y is O, and R1 and R3 are both —CH2CO2H, R2 is not —CH2CO2H or a straight chained, branched or cyclic aliphatic or aryl C1-C12 hydrocarbon, or R2 does not have the structure —C(CH2CO2H)3;
- (iii) when n is 1, and Y is O, R1 through R3 are not each an unsubstituted C1-C8 hydrocarbon;
- and (iv) when n is 2, and Y is O, R1 through R3 are not —CH2CO2H at all occurrences,
- or a pharmaceutically acceptable salt thereof.
A method of treating a cancer associated with aggregation of a p53 protein in a subject in need of such treatment, wherein the cancer is associated with one or more p53 mutations, comprising administering to said subject an effective amount of a compound of formula (I):
- wherein Ra is independently selected at each occurrence from hydrogen, C1-C12 hydrocarbons, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- and —N(R*)2;
- X is independently at each occurrence selected from —O—;
- —S—;
- —NH—;
- —NR*—;
- and —C(R*)2;
- Y is independently at each occurrence selected from —O—;
- —S—;
- —NH—;
- and —NR*—;
- R1 is selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- R2 is independently at each occurrence selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- R3 is selected from hydrogen or a straight chained, branched or cyclic aliphatic C1-C20 hydrocarbon;
- an aromatic C6-C20 hydrocarbon;
- a heteroaromatic C1-C20 hydrocarbon;
- an aryl C6-C20 hydrocarbon;
- a heteroaryl C1-C20 hydrocarbon, a C1-C12 perfluorocarbon, or a combination thereof, each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S, and each of which is optionally substituted with one or more of —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2 and combinations thereof;
- A is selected from hydrogen, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2;
- C1-C8 perfluorocarbon;
- an aliphatic C1-C12 hydrocarbon;
- an aromatic C1-C12 hydrocarbon;
- and a C1-C12 heteroaryl;
- B is selected from hydrogen, —F;
- —Cl;
- —Br;
- —I;
- —OH, —OR*;
- —NO;
- —NO2;
- —NO3;
- —O—NO;
- —N3;
- —NH2;
- —NHR*;
- —N(R*)2;
- —N(R*)3+;
- —N(R*)—OH;
- —O—N(R*)2;
- —N(R*)—O—R*;
- —CN;
- —NC;
- —(C═O)—R*;
- —CHO;
- —CO2H;
- —CO2R*;
- —(C═O)—S—R*;
- —O—(C═O)—H;
- —O—(C═O)—R*;
- —S—(C═O)—R*;
- —(C═O)—NH2;
- —(C═O)—N(R*)2;
- —(C═O)—NHNH2;
- —O—(C═O)—NHNH2;
- —(C═S)—NH2;
- —(C═S)—N(R*)2;
- —N(R*)—CHO;
- —N(R*)—(C═O)—R*;
- —SCN;
- —NCS;
- —NSO;
- —SSR*;
- —SO2R*;
- —SO2—N(R*)2;
- —S(═O)—OR*;
- —S(═O)—R*;
- —Si(R*)3;
- —CF3;
- —O—CF3;
- —P(R*)2;
- —O—P(═O)(OR*)2;
- —P(═O)(OR*)2;
- C1-C8 perfluorocarbon;
- an aliphatic C1-C12 hydrocarbon;
- an aromatic C1-C12 hydrocarbon;
- and a C1-C12 heteroaryl;
- R* is independently selected at each occurrence from hydrogen or C1-C12 hydrocarbons each of which optionally contains 1-8 heteroatoms selected from halogen, O, N, and S and combinations thereof;
- and
- n is an integer from 0 to 2;
- with the proviso that (i) when n is 0, and Y is O, R1 and R3 are not both —CH2CO2H;
- (ii) when n is 1, Y is O, and R1 and R3 are both —CH2CO2H, R2 is not —CH2CO2H or a straight chained, branched or cyclic aliphatic or aryl C1-C12 hydrocarbon, or R2 does not have the structure —C(CH2CO2H)3;
- (iii) when n is 1, and Y is O, R1 through R3 are not each an unsubstituted C1-C8 hydrocarbon;
- and (iv) when n is 2, and Y is O, R1 through R3 are not —CH2CO2H at all occurrences,
- or a pharmaceutically acceptable salt thereof.
Dependencies are inferred from the claim text.