Peak correlation and clustering in fluidic sample separation
AssigneeAgilent Technologies, Inc.
InventorsGerd Heinje, Rainer Jaeger
Life of this patent
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Abstract
A device for analyzing measurement data having a plurality of data sets, each data set being assigned to a respective one of a plurality of measurements, each data set having multiple features being indicative of different fractions of a fluidic sample, the device comprising a cluster determining unit configured for determining feature clusters by clustering features from different data sets presumably relating to the same fraction, a spread determining unit configured for determining for at least a part of the feature clusters a spread of the features within a respective feature cluster, and a display unit configured for displaying at least the part of the feature clusters together with a graphical indication of the corresponding spread.
Claims25
A device for analyzing measurement data, the device comprising:
- a processor configured to receive the measurement data, the measurement data comprising a plurality of data sets corresponding to a plurality of respective measurements, wherein:
- the plurality of respective measurements are performed by a fluid separation apparatus in a plurality of respective measurement runs on a plurality of respective fluidic samples;
- each data set comprises a plurality of features indicative of different fractions of one of the plurality of respective fluidic samples;
- each feature represents a combination of a value of a first measurement parameter with a value of a second measurement parameter;
- and
- the first measurement parameter is selected from the group consisting of:
- a retention time of a chromatography measurement, a retention volume of a chromatography measurement, and a mass to charge ratio of a coupled chromatography and mass spectroscopy measurement;
- a cluster determining unit configured to determine feature clusters by clustering features from different data sets corresponding to the same fraction based on at least one decision criterion, and further configured to determine, from the feature clusters, a suspicious feature for which a rule for clustering has failed;
- a spread determining unit configured to determine for at least a part of the feature clusters a spread of the features within a respective feature cluster;
- and
- a display unit configured to display at least the part of the feature clusters together with a graphical indication of the corresponding spread, including displaying the suspicious feature, and further configured to display at least the part of the feature clusters according to a coordinate system comprising a first axis and a second axis, wherein:
- the first axis corresponds to the value of the first measurement parameter;
- and
- the second axis corresponds to the number of the respective measurement run.
A method of analyzing measurement data, the method comprising:
- receiving the measurement data, the measurement data comprising a plurality of data sets corresponding to a plurality of respective measurements, wherein:
- the plurality of respective measurements are performed by a fluid separation apparatus in a plurality of respective measurement runs on a plurality of respective fluidic samples;
- each data set comprises a plurality of features indicative of different fractions of one of the plurality of respective fluidic samples;
- and
- each feature represents a combination of a value of a first measurement parameter with a value of a second measurement parameter;
- and
- the first measurement parameter is selected from the group consisting of:
- a retention time of a chromatography measurement, a retention volume of a chromatography measurement, and a mass to charge ratio of a coupled chromatography and mass spectroscopy measurement;
- determining feature clusters by clustering features from different data sets corresponding to the same fraction based on at least one decision criterion, and further determining, from the feature clusters, a suspicious feature for which a rule for clustering has failed;
- determining for at least a part of the feature clusters a spread of the features within a respective feature cluster;
- and
- displaying at least the part of the feature clusters together with a graphical indication of the corresponding spread, including displaying the suspicious feature, and further displaying at least the part of the feature clusters according to a coordinate system comprising a first axis and a second axis, wherein:
- the first axis corresponds to the value of the first measurement parameter;
- and
- the second axis corresponds to the number of the respective measurement run.
A device for processing measurement data, the device comprising
- a processor configured to receive the measurement data, the measurement data comprising a plurality of data sets corresponding to a plurality of respective measurements, wherein:
- the plurality of respective measurements are performed by a fluid separation apparatus in a plurality of respective measurement runs on a plurality of respective fluidic samples;
- each data set comprises a plurality of features indicative of different fractions of one of the plurality of respective fluidic samples;
- each feature represents a combination of a value of a first measurement parameter with a value of a second measurement parameter;
- and
- the first measurement parameter is selected from the group consisting of:
- a retention time of a chromatography measurement, a retention volume of a chromatography measurement, and a mass to charge ratio of a coupled chromatography and mass spectroscopy measurement;
- a cluster determining unit configured to determine feature clusters by clustering features from different data sets corresponding to the same fraction based on at least one decision criterion, by:
- ordering at least a part of the features in accordance with the value of the first measurement parameter;
- and
- determining the feature clusters by clustering features to a respective feature cluster in accordance with a clustering condition that a difference regarding the value of the first measurement parameter between adjacent features of a feature cluster in the ordered representation is below a predetermined threshold value,
- wherein the cluster determining unit is further configured to determine, from the feature clusters, a suspicious feature for which a rule for clustering has failed;
- a spread determining unit configured to determine for at least a part of the feature clusters a spread of the features within a respective feature cluster;
- and
- a display unit configured to display at least the part of the feature clusters together with a graphical indication of the corresponding spread, including displaying the suspicious feature, and further configured to display at least the part of the feature clusters according to a coordinate system comprising a first axis and a second axis, wherein:
- the first axis corresponds to the value of the first measurement parameter;
- and
- the second axis corresponds to the number of the respective measurement run.
A method of processing measurement data, the method comprising
- receiving the measurement data, the measurement data comprising a plurality of data sets corresponding to a plurality of respective measurements, wherein:
- the plurality of respective measurements are performed by a fluid separation apparatus in a plurality of respective measurement runs on a plurality of respective fluidic samples;
- each data set comprises a plurality of features indicative of different fractions of one of the plurality of respective fluidic samples;
- and
- each feature represents a combination of a value of a first measurement parameter with a value of a second measurement parameter;
- and
- the first measurement parameter is selected from the group consisting of:
- a retention time of a chromatography measurement, a retention volume of a chromatography measurement, and a mass to charge ratio of a coupled chromatography and mass spectroscopy measurement;
- determining feature clusters by clustering features from different data sets corresponding to the same fraction based on at least one decision criterion, by:
- ordering at least a part of the features in accordance with the value of the first measurement parameter;
- and
- determining the feature clusters by clustering features to a respective feature cluster in accordance with a clustering condition that a difference regarding the value of the first measurement parameter between adjacent features of a feature cluster in the ordered representation is below a predetermined threshold value;
- further determining, from the feature clusters, a suspicious feature for which a rule for clustering has failed;
- determining for at least a part of the feature clusters a spread of the features within a respective feature cluster;
- and
- displaying at least the part of the feature clusters together with a graphical indication of the corresponding spread, including displaying the suspicious feature, and further displaying at least the part of the feature clusters according to a coordinate system comprising a first axis and a second axis, wherein:
- the first axis corresponds to the value of the first measurement parameter;
- and
- the second axis corresponds to the number of the respective measurement run.
Dependencies are inferred from the claim text.