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US 9,689,034 B2Granted
Targeted sequencing of biomolecules by pulling through a liquid-liquid interface with an atomic force microscope
AssigneeInternational Business Machines Corporation
InventorsVenkat K. Balagurusamy, Stanislav Polonsky
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Abstract
A mechanism is provided for sequencing a biopolymer. The biopolymer is traversed from a first medium to a second medium. The biopolymer includes bases. As the biopolymer traverses from the first medium to the second medium, different forces are measured corresponding to each of the bases. The bases are distinguished from one another according to the different measured forces which are measured for each of the bases.
Claims9
A method of sequencing a polymer, comprising:
- vertically traversing the polymer from a first medium to a second medium in a chamber, wherein a first end of the polymer is connected to an atomic force microscope and a second end of the polymer is connected to a bottom surface of the chamber;
- wherein the polymer comprises blocks;
- wherein the first medium is water and the second medium is oil;
- as the polymer vertically traverses from the first medium to the second medium, measuring different measured forces corresponding to each of the blocks;
- and
- distinguishing the blocks from one another according to the different measured forces measured for each of the blocks, the distinguishing comprises:
- determining a plateau I and plateau II from the different measured forces, the plateau I defined to include a force for unwinding and stretching the polymer while in the first medium, the plateau II defined as crossing a boundary from the first medium to the second medium;
- determining a solvophobic force of one block of the polymer by a difference in the plateau I and the plateau II.
5 more elements
Dependencies are inferred from the claim text.