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US 9,632,093 B2Granted
Detecting neoplasm
AssigneeMayo Foundation for Medical Education and Research
InventorsWilliam R. Taylor, Jonathan J. Harrington, Patrick S. Quint, Hongzhi Zou, Harold S. Bergen, III, David I. Smith, David A. Ahlquist
Life of this patent
Estimating the term…
Abstract
This document relates to methods and materials for detecting premalignant and malignant neoplasms. For example, methods and materials for determining whether or not a stool sample from a mammal contains nucleic acid markers or polypeptide markers of a neoplasm are provided.
Claims2
A method for characterizing a biological sample comprising:
- (a) obtaining a biological sample from a human individual;
- (b) measuring a K-ras mutation score within the obtained biological sample through exposing a portion of the biological sample to one or more K-ras specific primers and determining the K-ras mutation score by performing a digital melt curve analysis or quantitative allele-specific PCR, wherein the K-ras specific primers comprise a nucleic acid sequence selected from the group consisting of SEQ ID NOs:
- 2, 3, 4, 5, 6, 7 and 8;
- (c) measuring a methylation level of a CpG site for BMP3 in a portion of the obtained biological sample through
- treating genomic DNA in the biological sample with bisulfite;
- amplifying the bisulfite-treated genomic DNA using primers specific for BMP3, and determining the methylation level of the CpG site by methylation-specific PCR, quantitative methylation-specific PCR, methylation-sensitive DNA restriction enzyme analysis, quantitative bisulfite pyrosequencing, or bisulfite genomic sequencing PCR;
- (d) comparing the K-ras mutation score and the BMP3 methylation level to a corresponding set of control samples without colorectal cancer;
- and
- (e) determining that the individual has colorectal cancer when 1) the measured K-ras mutation score is higher than in the control sample, and 2) the measured BMP3 methylation level is higher than in the control sample.
6 more elements
Dependencies are inferred from the claim text.