Modifications for antisense compounds
AssigneeIntegrated Dna Technologies, Inc.
InventorsMark Aaron Behlke, Richard Owczarzy, Yong You, Joseph Alan Walder, Kim Lennox
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Abstract
The invention pertains to modifications for antisense oligonucleotides, wherein the modifications are used to improve stability and provide protection from nuclease degradation. The modifications could also be incorporated into double-stranded nucleic acids, such as synthetic siRNAs and miRNAs.
Claims12
An antisense oligonucleotide comprising at least one modification that is incorporated between two bases of the antisense oligonucleotide, wherein the modification increases binding affinity and nuclease resistance of the antisense oligonucleotide, and wherein the modification has the structure:
- wherein
- X is a nitrogen or carbon atom, wherein if X is a carbon atom, the fourth substituent attached to the carbon atom can be hydrogen or a C1-C8 alkyl group;
- the linking groups L1 and L2 positioning the modification at an internal position of the oligonucleotide are independently alkyl, alkynyl, alkenyl, heteroalkyl, substituted alkyl, aryl, heteroaryl, substituted aryl, cycloalkyl, alkylaryl, or alkoxy;
- and
- R1-R5 are independently hydrogen, alkyl, alkynyl, alkenyl, heteroalkyl, substituted alkyl, aryl, heteroaryl, substituted aryl, cycloalkyl, alkylaryl, alkoxy, an electron withdrawing group, an electron donating group, an attachment point for a ligand, or
- wherein
- R6, R7, R9-R12 are independently hydrogen, alkyl, alkynyl, alkenyl, heteroalkyl, substituted alkyl, aryl, heteroaryl, substituted aryl, cycloalkyl, alkylaryl, alkoxy, an electron withdrawing group, or an electron donating group;
- and
- R8 is hydrogen, alkyl, alkynyl, alkenyl, heteroalkyl, substituted alkyl, aryl, heteroaryl, substituted aryl, cycloalkyl, alkylaryl, alkoxy, or an electron withdrawing group.
An antisense oligonucleotide having the structure:
- 5′-X1—Z—X2—X3—X4—Z—X5-3′
- wherein:
- X1 and X5 are independently 1-3 nucleotides;
- the internucleotide linkages are optionally phosphorothioate;
- Z is a napthylene-azo compound;
- X2 and X4 are independently 1-5 nucleotides wherein the internucleotide linkages are optionally phosphorothioate;
- and
- X3 is 10-25 nucleotides.
Dependencies are inferred from the claim text.