Method of selecting aptamers
AssigneeCaris Life Sciences Switzerland Holdings GmbH
InventorClive Gavin Brown
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Abstract
The present invention is a method for the identification of one or more aptamers to at least one target molecule, the method comprising: selecting candidate aptamer sequences that bind to a target molecule, assigning to the bound sequences a measure (fitness function) of each sequence's aptameric potential, allowing evolution of some or all of the sequences to create a new mixture of candidate sequences, and repeating the method with the newly created candidate aptamer pool until the aggregate aptameric potential of the candidate pool reaches a plateau, wherein sequences present in the final pool are optimal aptamers to the target molecule.
Claims29
A method for the identification of at least one aptamer to at least one target molecule, the method comprising:
- a) contacting a pool of candidate aptamer sequences with the at least one target molecule;
- b) partitioning unbound sequences from those sequences that have bound specifically to the at least one target molecule;
- c) dissociating the sequence-target complexes to obtain a ligand-enriched mixture of sequences;
- d) assigning to each sequence obtained in step c) a measure of the sequence's potential as an aptamer, wherein the measure comprises a fitness function;
- e) using the measure of step d) to determine the aptameric potential of the ligand-enriched mixture;
- f) allowing evolution of some or all of the sequences obtained in step c) using information obtained in step e) to create a new candidate aptamer pool;
- and
- g) repeating the steps a) to f) using the new candidate aptamer pool created in step f) as the input pool of candidate aptamer sequences in the next iteration of step a) until the aggregate aptameric potential of the candidate pool reaches a plateau, wherein sequences present in the final candidate aptamer pool are optimal aptamers to the at least one target molecule, thereby identifying the at least one aptamer.
Dependencies are inferred from the claim text.