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US 9,309,285 B2Granted
Macrocyclic broad spectrum antibiotics
AssigneeRqx Pharmaceuticals, Inc.
InventorsTucker Curran Roberts, Peter Andrew Smith, Robert I. Higuchi, David Campbell, Prasuna Paraselli
Life of this patent
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Abstract
Provided herein are antibacterial compounds, wherein the compounds in some embodiments have broad spectrum bioactivity. In various embodiments, the compounds act by inhibition of bacterial type 1 signal peptidase (SpsB), an essential protein in bacteria. Pharmaceutical compositions and methods for treatment using the compounds described herein are also provided.
Claims16
A compound of Formula (I):
- wherein:
- E1 is (C1-C6)alkyl, (C2-C7)alkenyl, (C2-C7)alkynyl, (C3-C7)cycloalkyl, heterocyclyl, heteroaryl, or aryl;
- E2 is (C2-C7)alkenyl, (C2-C7)alkynyl, (C3-C7)cycloalkyl, heterocyclyl, heteroaryl, or aryl;
- L1 is a bond, —O—, —S—, —NR4—, —C(O)—, —CH2O—, —OCH2—, —CH2S—, —SCH2—, —CH2NR4—, —NR4CH2—, —NR4C(O)—, —C(O)NR4—, —NR4S(O)2—, —S(O)2NR4—, —NR4C(O)NR4—, —NR4C(O)O—, —OC(O)NR4—, or (C1-C4)alkylene optionally substituted with OH, CN, NO2, halogen, or (C1-C6)alkyl;
- L2 is a bond;
- X is a group of formula
- wherein n4, n5, and n6 are each independently 1, 2 or 3;
- n7 is 0, 1 or 2;
- R21b and R22b are independently at each occurrence hydrogen, hydroxy, (C1-C6)alkyl, (C3-C7)cycloalkyl, 5- to 7-membered heteroaryl, 5- to 7- membered heterocyclyl, or (C6-C10) aryl, wherein any alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl is optionally substituted with 1 to 3 J;
- R25 is H, OH,
- ORC,
- or NR25aR25b where R25a and R25b are each independently H, SO2(C1-C6)alkyl, or alkyl;
- RB1 and RB2 are each independently H, (C1-C6) alkyl, (C3-C6) cycloalkyl, ORC, C(═O)N(RC)2, OC(═O)N(RC)2, C(═O)ORC, OC(═O)ORC, nitro, trifluoromethyl, trifluoromethoxy, (C1-C6)alkoxy, (C1-C6)thioalkoxy, N(RC)2, 5-7 membered heterocyclyl or 5-7 membered heteroaryl, or (C6-C10) aryl;
- RC is independently at each occurrence H or (C1-C6) alkyl, and a wavy line indicates a point of attachment of X to a carbon of formula (I) bearing X;
- or
- X is CO2H, CH2CO2H, C(═O)NHCH2C(═O)H, CH2C(═O)H,
- C(═O)N(H)CH(R7)B(ORB3)(ORB4), or
- wherein R7 is H, methyl, ethyl, or —CH2OH;
- or R7 and RB3 together with the boron atom form a 5- or 6-membered boron containing ring;
- RB3 and RB4 are each independently H, (C1-C6)alkyl, —CH2CO2H, or —CH2CH2CO2H;
- or RB3 and RB4 together with the boron atom form an optionally substituted 5- or 6-membered boron containing ring;
- R5 is aryl, heteroaryl, or a linear or branched alkyl chain of about 1-22 carbon atoms, wherein R5 is bonded to the carbonyl carbon to which it is attached directly or by an NR4, to provide an amide or urea linkage, respectively;
- optionally comprising within the chain or at a
- chain terminus
- wherein Z is a bond, O, S, NH, CH2 or C≡C;
- R2 and R3 are each independently nitro, halo, cyano, hydroxy, glycosyloxy, amino, (C1-C4)alkoxy, (C1-C4)acyloxy, (C1-C4)alkyl, or a group cleavable under physiological conditions to provide a compound of formula (I) wherein R2 or R3 respectively is hydroxy, wherein any carbon atom is optionally substituted with J;
- n1 is 1;
- n2 is 0;
- n3 and n8 are independently 0, 1 , or 2;
- each m is independently 0 or 1;
- R1 is hydrogen or (C1-C6)alkyl optionally substituted with 1 to 3 J;
- or R1 together with E1 form a ring;
- R4, R4′, and R4″are each independently at each occurrence hydrogen, or (C1-C6)alkyl optionally substituted with 1 to 3 J;
- R6 is hydrogen, or (C1-C6)alkyl optionally substituted with 1 to 3 J;
- or R6 together with RA4 form a ring;
- RA1, RA1′,RA2, RA3, RA3′, RA4, RA4′, RA7, RA7′, RA8, RA8′, RA9, RA9′, RA10, and RA10′ are independently at each occurrence hydrogen, (C1-C6)alkyl, (C3-C7)cycloalkyl, 5- to 7- membered heteroaryl, 5- to 7- membered heterocyclyl, or (C6-C10) aryl, wherein any alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl is optionally substituted with 1 to 3 J;
- RA6 is amino, (C1-C6)alkyl, (C3-C7)cycloalkyl, 5- to 7- membered heteroaryl, 5- to 7- membered heterocyclyl, or (C6-C10) aryl, wherein any alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl is optionally substituted with 1 to 3 J;
- J is halogen, R′, OR′, CN, CF3, OCF3, (CH2)0-pN(R′)2, (CH2)0-pSR′, (CH2)0-pS(O)2R′, (CH2)0-pS(O)2N(R′)2, (CH2)0-pSO3R′, (CH2)0-pC(O)R′(CH2)0-pC(O)OR′(CH2)0-pC(O)N(R′)2, (CH2)0-pOC(O)N(R′)2, (CH2)0-pNH—C (O)R′(CH2)0-pN(R′)SO2R′(CH2)0-pN(R′)C(O)OR′(CH2)0-pN(R′)C(O)R′, (CH2)0-pN(R′)C(O)N(R′)2, or (CH2)0-pC(═NH)N(R′)2, wherein p is 4;
- each R′ is independently at each occurrence hydrogen, (C1-C6)-alkyl, (C2-C7)-alkenyl, (C2-C7)-alkynyl, (C3-C10)-cycloalkyl, (C3-C10)-cycloalkenyl, aryl, or heteroaryl wherein any alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, aryl or heteroaryl is optionally substituted with a substituent selected from F, Cl, Br, I, —CN, —NO2, —OH, —CF3, —OCF3, —OCH3, —NH2,—N((C1-C4)alkyl)2, —NH(C1-C4)alkyl, C1-C6alkyl, C3-C8cycloalkyl, or C1-C6heteroalkyl;
- or a pharmaceutically acceptable salt, solvate, or prodrug thereof.
37 more elements
Dependencies are inferred from the claim text.