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US 9,285,372 B2Granted
Methods and compositions for identifying D-peptidic compounds that specifically bind target proteins
AssigneesReflexion Pharmaceuticals, Inc., The Governing Council of the University of Toronto
InventorsDana Ault-Riche, Stephen B. H. Kent, Sachdev S. Sidhu, Maruti Uppalapati
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Abstract
Methods and compositions for identifying D-peptidic compounds that specifically bind target proteins are provided. Aspects of the methods include screening libraries of 20 residue or more L-peptidic compounds for specific binding to 40 residue or more D-target proteins. Once a L-peptidic compound has been identified that specifically binds to the D-target protein, the D-enantiomer of that compound may be produced.
Claims17
A method comprising:
- a) contacting a 50 residue or more D-target protein with a library of 50 residue or more distinct β1 domain of Protein G (GB1) L-peptidic compounds comprising a 4β-1α structural motif, wherein the compounds of the library are described by the formula β1-β2-α1-β3-β4 wherein β1, β2, β3 and β4 are independently beta-strand domains;
- and β1, β2, α1, β3, β4 are connected independently by linking sequences of between 1 and 10 residues in length, wherein the compounds of the library have at least 8 mutations outside of the β1-β2 and β3-β4 regions, wherein the compounds of the library have at least 10 conserved residues in the β1-β2 and β3-β4 regions, wherein the library is a phage display library, wherein the compounds of the library comprise between 20 and 80 residues;
- b) identifying a L-peptidic compound of the library that specifically binds to the D-target protein;
- and
- c) producing the D-peptidic compound of the identified L-peptidic compound.
2 more elements
Dependencies are inferred from the claim text.