Topoisomerase binding probe and method of use
AssigneeSRI International
InventorsPeter Madrid, Bryan Glaser, Jeremiah Malerich
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Abstract
An aminocoumarin conjugated to a fluorescent label through a secondary amine, is operative as a fluorescent polarization probe of the DNA gyrase B or topoisomerase IV E subunit. The probe is used for detecting topoisomerase inhibitor binding by fluorescence polarization, particularly in a high-through put topoisomerase inhibitor assay.
Claims20
A fluorescence polarization probe comprising an aminocoumarin conjugated to a fluorescent label, said probe operative as a fluorescent polarization probe of the ATP-binding site of prokaryotic DNA gyrase B or topoisomerase IV E subunit, wherein the aminocoumarin is a 3-amino-4,7-dihydroxycumarin ring moiety linked with a sugar moiety in 7-position and a benzoic acid derivative moiety in 3-position, and the fluorescent probe is linked to the benzoic acid derivative moiety;
- the aminocoumarin is novobiocin or clorobiocin;
- the fluorescent label is an acridine, a cyanine, a fluorone, an oxazin, a phenanthridine, a rhodamine or a BODIPY (boron-dipyrromethene);
- and
- the subunit is gyrase, B subunit of Francisella tularensis.
Dependencies are inferred from the claim text.