Back to results
US 7,920,972 B2Granted
G-matrix Fourier transformation (GFT) nuclear magnetic resonance (NMR) experiments for resonance assignment and structure determination of organic molecules
AssigneeThe Research Foundation of State University of New York
InventorsThomas A. Szyperski, Hanudatta S. Atreya
Life of this patent
Estimating the term…
Abstract
The present invention discloses a suite of G2FT and GFT NMR experiments that can be used for complete resonance assignments of proteins and for obtaining structural (conformational and orientational) constraints for determining high resolution three-dimensional structures of biomolecules.
Claims8
A method of conducting a (5,3) dimensional (D) [HN{N,CO}{CαβCα}] G-matrix Fourier transformation (GFT) nuclear magnetic resonance (NMR) experiment, said method comprising:
- providing a sample, wherein said sample is a protein molecule having two consecutive amino acid residues, i−1 and i, and the chemical shift values for the following nuclei are measured:
- (1) α- and β-carbons of amino acid residues i and i−1, 13Cα/βi/i−1;
- (2) a polypeptide backbone amide nitrogen of amino acid residue i, 15Ni;
- (3) a polypeptide backbone carbonyl carbon of amino acid residue i−1, 13C′i−1;
- and (4) a polypeptide backbone amide proton of amino acid residue i, 1HNi;
- applying radiofrequency pulses for a first 5D FT NMR experiment to the sample;
- using a spectrometer;
- selecting a first set of 2 indirect chemical shift evolution periods of the 5D FT NMR experiment, 13Cα/βi/i−1 and 13Cαi/i−1;
- jointly sampling the first set of 2 indirect chemical shift evolution periods in a first indirect time domain dimension, t1(13Cα/βi/i−1, 13Cαi/i−1), whereby chemical shift evolution periods which provide sequential connectivities and spectral resolution are subjected to the joint sampling in the first indirect time dimension;
- selecting a second set of 2 indirect chemical shift evolution periods of the 5D FT NMR experiment, 15Ni and 13C′i−1;
- jointly sampling the second set of 2 indirect chemical shift evolution periods in a second indirect time domain dimension, t2(15Ni, 13C′i−1), whereby chemical shift evolution periods which serve to provide spectral resolution are subjected to separate joint sampling in the second indirect time dimension;
- independently cosine and sine modulating NMR signals detected in a direct dimension to generate 3D basic NMR spectra comprising frequency domain signals having a chemical shift multiplet with 4 components resulting from each of 2 chemical shift doublet components in a first frequency domain dimension, ω1(13Cα/β, 13Cα), giving rise to 2 chemical shift doublet components in a second frequency domain dimension, ω2(15N, 13C′), thereby enabling phase-sensitive sampling of all 4 indirect chemical shift evolution periods;
- and
- transforming the 3D basic NMR spectra into 3D phase-sensitively edited basic NMR spectra, wherein the 4 chemical shift multiplet components of the 3D basic NMR spectra are edited to yield 3D phase-sensitively edited basic NMR spectra having individual chemical shift multiplet components.
11 more elements
Dependencies are inferred from the claim text.