System, method and apparatus for assembling and mining life science data

A computer system for storing life science information in a database, the computer system comprising:

• a processor;
• an electronic database storage module for storing in the database a library of machine-readable symbolic representations into which life science knowledge is adapted to be encoded according to a life sciences ontology, each machine-readable symbolic representation comprising:
• at least two unspecified object identifiers;
• a relationship connector, wherein the relationship connector relates two of the at least two object identifiers to each other based on a casual relationship between the object identifiers;
• and
• constraint information that defines which connections among the object identifiers are permitted so that life sciences knowledge encoded into the machine-readable symbolic representation is semantically rigorous and based on the life sciences ontology;
• and
• a graphical user interface for managing addition of new life sciences data to a database, the graphical user interface comprising:
• a display screen that receives an input selecting one of the machine-readable symbolic representations as a template to represent the new data based at least in part on the life science ontology;
• the graphical user interface restricting input of any data element that does not conform to the constraint information associated with the selected machine-readable symbolic representation such that the semantically rigorous relationships for the life sciences ontology are maintained;
• the graphical user interface receiving input of at least one data element that conforms to the constraint information to instantiate the machine-readable symbolic representation.