# US 7,410,765 B2 · System for protease mediated protein expression

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- Number: US 7,410,765 B2
- Document ID: US7410765B2
- Status: Granted
- Kind: B2
- Application number: 11/281,644
- Filed: 2005-11-17
- Published: 2006-05-18
- Granted: 2008-08-12
- Earliest claimed: 2004-11-17
- Assignees: The Regents of the University of California
- Inventors: Arnaud Lacoste; Christopher J. Evans
- Web page: https://patentgrep.com/patent/US7410765B2

## CPC

- C07K 7/08: having 12 to 20 amino acids (gastrins C07K14/595; somatostatins C07K14/655; melanotropins C07K14/68)
- C12N 15/85: for animal cells
- C12Q 1/37: involving peptidase or proteinase
- C07K 2319/50: containing protease site
- G01N 2500/02: Screening involving studying the effect of compounds C on the interaction between interacting molecules A and B (e.g. A = enzyme and B = substrate for A, or A = receptor and B = ligand for the receptor)
- C07K: PEPTIDES (peptides in foodstuffs A23; obtaining protein compositions for foodstuffs, working-up proteins for foodstuffs A23J; preparations for medicinal purposes A61K; peptides containing beta-lactam rings C07D; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, C07D; ergot alkaloids of the cyclic peptide type C07D519/02; macromolecular compounds having statistically distributed amino acid units in their molecules, i.e. when the preparation does not provide for a specific; but for a random sequence of the amino acid units, homopolyamides and block copolyamides derived from amino acids C08G69/00; macromolecular products derived from proteins C08H1/00; preparation of glue or gelatine C09H; single cell proteins, enzymes C12N; genetic engineering processes for obtaining peptides C12N15/00; compositions for measuring or testing processes involving enzymes C12Q; investigation or analysis of biological material G01N33/00)
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)
- C12Q: MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS (immunoassay G01N33/53); COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q)

## Abstract

The present invention provides methods and materials that can be used to detect, examine and exploit protease mediated protein expression. An illustrative embodiment of the invention is a polynucleotide encoding a polypeptide having a plurality of operatively linked elements comprising a polypeptide degradation signal that functions as a proteosome substrate; a polypeptide of interest having an observable activity; and a linker disposed between the polypeptide degradation signal and the polypeptide of interest. The linker comprises a protease recognition motif that is capable of being specifically recognized and cleaved by a protease. The activity of the polypeptide of interest is observed when the motif is specifically recognized and cleaved by the protease; and the activity of the polypeptide of interest is decreased or not observed when the motif is not specifically recognized and cleaved by the protease.

## Claims

### Claim 1

A polynucleotide encoding a protease-regulated polypeptide comprising the following operatively linked elements:
(a) a nucleic acid sequence encoding a protein degradation signal;
(b) a nucleic acid sequence encoding a polypeptide of interest; and
(c) a nucleic acid sequence encoding a linker set forth as SEQ ID NO:1 disposed between (a) and (b), wherein the linker comprises a protease recognition motif that is cleaved by a protease;
wherein, in the presence of the protease, cleavage of the linker protects the polypeptide of interest from proteasomal degradation; and, in the absence of the protease, activity of the polypeptide of interest is decreased.

### Claim 2 (depends on 1)

A first vector comprising the polynucleotide of claim 1.

### Claim 3 (depends on 2)

A cell comprising the first vector of claim 2.

### Claim 4 (depends on 1)

The polynucleotide of claim 1, wherein the protein degradation signal is a ubiquitin degradation signal.

### Claim 5 (depends on 1)

The polynucleotide of claim 1, wherein the polypeptide of interest is a reporter protein whose expression can be detected.

### Claim 6 (depends on 1)

The polynucleotide of claim 1, wherein the polypeptide of interest is a therapeutically active polypeptide.

### Claim 7 (depends on 2)

The first vector of claim 2, further comprising a promoter and/or an enhancer that modulates the expression of the protease-regulated polypeptide.

### Claim 8 (depends on 3)

The cell of claim 3, wherein the polypeptide of interest is a first reporter protein, and the cell further comprises a second vector that encodes a second reporter protein whose expression is modulated by a tissue specific promoter or a tissue specific enhancer.

### Claim 9 (depends on 1)

A kit comprising the polynucleotide of claim 1 and a suitable container.
