Cross-linked glycopeptide-cephalosporin antibiotics
AssigneeTheravance, Inc.
InventorsPaul R. Fatheree, Martin S. Linsell, Daniel Marquess, Daniel D. Long, Jason P. Chinn, Matthew B. Nodwell, Edmund J. Moran, James B. Aggen
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Abstract
This invention provides cross-linked glycopeptide—cephalosporin compounds and pharmaceutically acceptable salts thereof which are useful as antibiotics. This invention also provides pharmaceutical compositions containing such compounds; methods for treating bacterial infections in a mammal using such compounds; and processes and intermediates useful for preparing such compounds.
Claims35
A compound of formula I:
- or a pharmaceutically-acceptable salt thereof, wherein:
- each of X1 and X2 is independently hydrogen or chloro;
- W is selected from N and CCl;
- R2 is hydrogen or C1-6 alkyl;
- one of R4 and R5 is hydroxy and the other is hydrogen;
- each of R6 and R7 is independently hydrogen or methyl;
- R8 is hydrogen or a group of the formula:
- R9 is selected from hydrogen, C1-6 alkyl, and C3-6 cycloalkyl, where alkyl and cycloalkyl may be substituted with —COOH or 1 to 3 fluorine atoms;
- each R3 is independently selected from C1-6 alkyl, —OR, halo, —SR, —S(O)R, —S(O)2R, and —S(O)2OR, where each R is independently C1-6 alkyl, which may be substituted with COOH or 1 to 3 fluorine atoms;
- n is 0, 1, 2 or 3;
- x is 0, 1 or 2;
- y is 0, 1 or 2;
- Ra is —Y—R″—, where
- R″ is selected from C1-12 alkylene, C2-12 alkenylene, C2-12 alkynylene, C3-6 cycloalkylene, C6-10 arylene, C2-9 heteroarylene, C3-6 heterocycle, and combinations thereof, and is optionally substituted with 1 or 2 groups selected from Z, where Z consists of —OR′, —SR′, —F, —Cl, —N(R′)2, —OC(O)R′, —C(O)OR′, —NHC(O)R′, —C(O)N(R′)2, —CF3, and —OCF3, and side chains of naturally occurring amino acids, where each R′ is independently hydrogen or C1-4 alkyl;
- and R″ contains at most 20 non-hydrogen atoms;
- Y, which links R″ to the pyridinium ring at a meta or para position, is selected from a direct bond, NR′, O, S, C(O), NR′C(O), and C(O)NR′, precluding direct bonds between heteroatoms in Y and R″;
- each Rb and Rd is independently selected from the group consisting of hydrogen, C1-6 alkyl, C2-6 alkenyl, and C2-6 alkynyl;
- each Rc is independently —Y′—R″—Y′—, where each Y′ is independently selected from a direct bond, O, and NR′, precluding direct bonds between heteroatoms in Y′ and R″;
- and
- each Re is independently selected from R″.
A compound of formula II:
- or a pharmaceutically acceptable salt thereof;
- wherein
- W is selected from N and CCl;
- R9 is selected from hydrogen, C1-6 alkyl, and C3-6 cycloalkyl, where alkyl and cycloalkyl may be substituted with —COOH or 1 to 3 fluorine atoms;
- the pyridinium ring has meta or para substitution;
- R10 is hydrogen or C1-6 alkyl;
- and
- R11 is C1-12 alkylene.
A process for preparing a compound of formula I:
- or a salt thereof, wherein:
- each of X1 and X2 is independently hydrogen or chloro;
- W is selected from N and CCl;
- R2 is hydrogen or C1-6 alkyl;
- one of R4 and R5 is hydroxy and the other is hydrogen;
- each of R6 and R7 is independently hydrogen or methyl;
- R8 is hydrogen or a group of the formula:
- R9 is selected from hydrogen, C1-6 alkyl, and C3-6 cycloalkyl, where alkyl and cycloalkyl may be substituted with —COOH or 1 to 3 fluorine atoms;
- each R3 is independently selected from C1-6 alkyl, —OR, halo, —SR, —S(O)R, —S(O)2R, and —S(O)2OR, where each R is independently C1-6 alkyl, which may be substituted with COOH or 1 to 3 fluorine atoms;
- n is 0, 1, 2 or 3;
- x is 0, 1 or 2;
- y is 0, 1 or 2;
- Ra is —Y—R″—, where
- R″ is selected from C1-12 alkylene, C2-12 alkenylene, C2-12 alkynylene, C3-6 cycloalkylene, C6-10 arylene, C2-9 heteroarylene, C3-6 heterocycle, and combinations thereof, and is optionally substituted with 1 or 2 groups selected from Z, where Z consists of —OR′, —SR′, —F, —Cl, —N(R′)2, —OC(O)R′, —C(O)OR′, —NHC(O)R′, —C(O)N(R′)2, —CF3, and —OCF3, and side chains of naturally occurring amino acids, where each R′ is independently hydrogen or C1-4 alkyl;
- and R″ contains at most 20 non-hydrogen atoms;
- Y, which links R″ to the pyridinium ring at a meta or para position, is selected from a direct bond, NR′, O, S, C(O), NR′(CO), and (CO)NR′, precluding direct bonds between heteroatoms in Y and R″;
- each Rb and Rd is independently selected from the group consisting of hydrogen, C1-6 alkyl, C2-6 alkenyl, and C2-6 alkynyl;
- each Rc is independently —Y′—R″—Y′—, where each Y′ is independently selected from a direct bond, O, and NR′, precluding direct bonds between heteroatoms in Y′ and R″;
- and
- each Re is independently selected from R″;
- wherein the process comprises reacting a compound of formula 1:
- or a salt or activated or protected derivative thereof, with a compound of formula 3 or 4:
- or a salt or activated or protected derivative thereof to provide a compound of formula I or a salt thereof.
A process for preparing a compound of formula I:
- or a salt thereof, wherein:
- each of X1 and X2 is independently hydrogen or chloro;
- W is selected from N and CCl;
- R2 is hydrogen or C1-6 alkyl;
- one of R4 and R5 is hydroxy and the other is hydrogen;
- each of R6 and R7 is independently hydrogen or methyl;
- R8 is hydrogen or a group of the formula:
- R9 is selected from hydrogen, C1-6 alkyl, and C3-6 cycloalkyl, where alkyl and cycloalkyl may be substituted with —COOH or 1 to 3 fluorine atoms;
- each R3 is independently selected from C1-6 alkyl, —OR, halo, —SR, —S(O)R, —S(O)2R, and —S(O)2OR, where each R is independently C1-6 alkyl, which may be substituted with COOH or 1 to 3 fluorine atoms;
- n is 0, 1, 2 or 3;
- x is 0, 1 or 2;
- y is 0, 1 or 2;
- Ra is —Y—R″—, where
- R″ is selected from C1-12 alkylene, C2-12 alkenylene, C2-12 alkynylene, C3-6 cycloalkylene, C6-10 arylene, C2-9 heteroarylene, C3-6 heterocycle, and combinations thereof, and is optionally substituted with 1 or 2 groups selected from Z, where Z consists of —OR′, —SR′, —F, —Cl, —N(R′)2, —OC(O)R′, —C(O)OR′, —NHC(O)R′, —C(O)N(R′)2, —CF3, and —OCF3, and side chains of naturally occurring amino acids, where each R′ is independently hydrogen or C1-4 alkyl;
- and R″ contains at most 20 non-hydrogen atoms;
- Y, which links R″ to the pyridinium ring at a meta or para position, is selected from a direct bond, NR′, O, S, C(O), NR′(CO), and (CO)NR′, precluding direct bonds between heteroatoms in Y and R″;
- each Rb and Rd is independently selected from the group consisting of hydrogen, C1-6 alkyl, C2-6 alkenyl, and C2-6 alkynyl;
- each Rc is independently —Y′—R″—Y′—, where each Y′ is independently selected from a direct bond, O, and NR′, precluding direct bonds between heteroatoms in Y′ and R″;
- and
- each Re is independently selected from R″;
- wherein the process comprises reacting a compound of formula 5:
- or a salt or activated or protected derivative thereof;
- with a compound of formula 2:
- or a salt or activated or protected derivative thereof;
- to provide a compound of formula I or a salt thereof.
Dependencies are inferred from the claim text.