Method, system, and program for use in displaying expression phenomenon in living matters

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• displaying in parallel on the display screen three-dimensional images representing expression phenomena for each cell or site of said living organisms of multiple species;
• and
• comparing the three-dimensional images representing the gene expression phenomena for each cell or site of said living organisms of multiple species to visually display similarities therebetween.

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display on the display screen at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• and
• mapping said three-dimensional images of said cell or site along a time axis to display said three-dimensional images on the display screen in one color or multiple colors in various scales depending on a gene expression frequency in said cell or site.

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display on the display screen at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• and
• mapping three-dimensional images of two or more cells or sites on coordination points along an axis to display said three-dimensional images on the display screen in one color or multiple colors in various scales of a change in gene expression frequency in said cells or sites in parallel.

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• and
• organizing and displaying a three-dimensional image of the expression phenomenon and a position on a three-dimensional gene map of a gene that causes the expression phenomenon.

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• and
• organizing and displaying three-dimensional images of the expression phenomenon of a gene in two or more cells or sites and a position on a three-dimensional gene map of a gene that causes the expression phenomenon.

A method for displaying a gene expression phenomenon in one or more living organisms in a system comprising a database that collects, for each cell or each site of said living organisms along a time axis, data indicative of a shape of said cell or site and expression data associated with a degree of expression of the gene expression phenomenon in said cell or site along a time axis;

• and processing means adapted to obtain said data indicative of the shape and expression data that are collected in said database to visualize and display the gene expression phenomenon on a display screen, wherein said method comprising:
• displaying as a three-dimensional image on the display screen a shape of said living organisms of which the gene expression phenomenon is observed;
• setting a viewpoint by a user via a keyboard or a mouse on a three-dimensional space where the gene expression phenomenon in said living organisms displayed is to be observed;
• reading the gene expression data of said cell or site of said living organisms out of said database, creating a plurality of three-dimensional images representing the gene expression phenomenon at the viewpoint set at said second step or at a fixed viewpoint, to display at least one of said three-dimensional images in multiple tones using one color or multiple colors, each of the tones corresponding to a degree of expression of the gene expression phenomenon;
• and
• mapping expression data of a cell or a site of a plurality of genes of one living organism on coordination points along a circumferential path on a plane, said expression data of each of the plurality of genes being shown as a bar with a height corresponding to a degree of one respect of gene expression phenomenon.