Pharmacophore recombination for the identification of small molecule drug lead compounds
AssigneeThe Regents of the University of California
InventorsJonathan A. Ellman, Ingrid Choong
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Abstract
A library of candidate target binding fragments (CTBF's) each CTBF being a small organic molecule and having a linkable functional group (LFG) or blocked form thereof (BLFG), wherein the LFG or BLFG contains a linking group (LG), the LG being a disulfide group.
Claims22
A method for screening a library of small organic molecules for one or more candidate target binding fragments (CTBF's) that bind to a target biological molecule (TBM), each CTBF having a linkable functional group (LFG) or blocked form thereof (BLFG), wherein the LFG or BLFG contains a disulfide linking group (LG), the method comprising:
- (a) contacting the TBM with individual members of a library of the CTBF;
- (b) detecting or determining which CTBF's bind to the TBM;
- and
- (c) selecting CTBF's that bind to the TBM;
- wherein the library is represented by the formula:
- CTBF-S-S-R8
- wherein R8 is
- a straight chain or branched alkyl of 1 to 10 carbon atoms that is optionally substituted with up to five groups selected from the group consisting of halide, alkyl, aryl, heteroaryl, carboxy ester, carboxamide, amino, n-acylamino, alkoxy, hydroxy, mercapto, phosphono and sulphono;
- or
- an aryl or heteroaryl that is optionally substituted with halide, alkyl, aryl, halide, heteroaryl, carboxy ester, carboxamide, amino, n-acylamino, alkoxy, hydroxy, mercapto or phosphono;
- and wherein each CTBF of the library further comprises at least a second LG selected from the group consisting of amide, secondary amine, ureido, thiourea, carbamate and sulfonamide.
Dependencies are inferred from the claim text.