Peptide nucleic acid monomers and oligomers
AssigneePeter Nielsen
InventorsPeter E. Nielsen, Gerald Haaima, Anne B. Eldrup
Life of this patent
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Abstract
Novel peptide nucleic acid (PNA) oligomers and their constituent monomers are disclosed. The PNA oligomers and linked PNAs form triple stranded structures with nucleic acids that show an increased specificity for thymidine in nucleic acid targets relative to naturally occurring nucleobases.
Claims42
A compound for binding Watson-Crick base pairs in a double helix having the formula:
- wherein:
- R8 is H, COCH3 or an amino protecting group;
- R9 is hydrogen or a side chain of a naturally occurring amino acid;
- R10 is O, NH, O-alkylene or a lysine residue;
- W is —(CH2)m— where m is from 0 to 6, or
- where
- b is an integer from 0 to 4;
- k is from 0 to 5;
- n is 0 or 1;
- L has the formula
- Q is CH or N;
- R17 is H or C1-C8 alkyl;
- each R11 and R12 is, independently, H, C1-C8 alkyl, or halogen;
- or R11 and R12 together with the carbon atoms to which they are attached form a phenyl group;
- T has the formula:
- j and z are each, independently, from 0 to 5 with the sum of j and z being from 1 to 7;
- M is C(═O), S(O)2, phenyl or P(O)2;
- V is NH, S, or CH2;
- a, h and g are each, independently, 0 or 1;
- and
- R13 and R14 are each independently H or a nitrogen or oxygen protecting group.
A compound consisting of a plurality of peptide nucleic acid oligomers linked by linking groups, wherein at least one of said peptide nucleic acid oligomers comprises a moiety having the formula:
- wherein:
- R8 is H, COCH3 or an amino protecting group;
- R9 is hydrogen or a side chain of a naturally occurring amino acid;
- R10 is O, NH, O-alkylene or a lysine residue;
- W is —(CH2)m— where m is from 0 to 6, or
- where
- b is an integer from 0 to 4;
- k is from 0 to 5;
- n is 0 or 1;
- L has the formula
- Q is CH or N;
- R17 is H or C1-C8 alkyl;
- each R11 and R12 is, independently, H, C1-C8 alkyl, or halogen;
- or R11 and R12 together with the carbon atoms to which they are attached form a phenyl group;
- T has the formula:
- j and z are each, independently, from 0 to 5 with the sum of j and z being from 1 to 7;
- M is C(═O), S(O)2, phenyl or P(O)2;
- V is NH, S, or CH2;
- and
- a, h and g are each, independently, 0 or 1.
A compound for binding Watson-Crick base-pairs in a double helix wherein said compound has the formula:
- wherein:
- L has the formula:
- Q is CH or N;
- R17 is H or C1-C8 alkyl;
- each R11 and R12 is, independently, H, C1-C8 alkyl, or halogen;
- or R11 and R12 together with the carbon atoms to which they are attached form a phenyl group;
- A is a single bond, a methylene group or a group of formula:
- where:
- X is O, S, Se, NR3, CH2 or C(CH3)2;
- Y is a single bond, O, S or NR4;
- each p, q, r and s is, independently, zero or an integer from 1 to 5;
- each R1 and R2 is, independently, hydrogen, (C1-C4)alkyl, hydroxy, alkoxy, alkylthio, amino or halogen, wherein said (C1-C4)alkyl is optionally substituted with hydroxy, alkoxy, or alkylthio;
- each R3 and R4 is, independently, selected from the group consisting of hydrogen, (C1-C4)alkyl, hydroxy- or alkoxy- or alkylthio-substituted (C1-C4)alkyl, hydroxy, alkoxy, alkylthio and amino;
- R15 is OH, a protected hydroxyl group, or a protecting group;
- and
- R16 is H or an amino protecting group.
An oligomeric compound for binding Watson-Crick base pairs in a double helix wherein said compound comprises at least one monomeric unit having the formula:
- wherein:
- R8 is H, COCH3 or an amino protecting group;
- R9 is hydrogen or a side chain of a naturally occurring amino acid;
- R10 is O, NH, O-alkylene or a lysine residue;
- W is —(CH2)m— where m is from 0 to 6, or
- where
- b is an integer from 0 to 4;
- k is from 0 to 5;
- n is 0 or 1;
- L has the formula:
- Q is CH or N;
- R17 is H or C1-C8 alkyl;
- each R11 and R12 is, independently, H, C1-C8 alkyl, or halogen;
- or R11 and R12 together with the carbon atoms to which they are attached form a phenyl group;
- T has the formula:
- j and z are each, independently, from 0 to 5 with the sum of j and z being from 1 to 7;
- M is C(═O), S(O)2, phenyl or P(O)2;
- V is NH, S, or CH2;
- and
- a, h and g are each, independently, 0 or 1.
Dependencies are inferred from the claim text.