Histone deacetylase inhibitors
AssigneeCircaGen Pharmaceutical
InventorsHsuan-Yin Lan-Hargest, Robert J. Kaufman, Norbert L. Wiech
Life of this patent
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Abstract
Compounds having a zinc-binding moiety, such as, for example, a hydroxamic acid group, can inhibit histone deacetylase. Histone deacetylase inhibition can repress gene expression, including expression of genes related to tumor suppression. Inhibition of histone deacetylase can lead to the histone deacetylase-mediated transcriptional repression of tumor suppressor genes. For example, inhibition of histone deacetylase can provide an alternate route for treating cancer, hematological disorders, such as hematopoiesis, and genetic related metabolic disorders, such as, cystic fibrosis and adrenoleukodystrophy.
Claims81
A compound of formula (I):
- wherein
- A is a cyclic moiety selected from the group consisting of C3-14 cycloalkyl, 3-14 membered heterocycloalkyl, C4-14 cycloalkenyl, 3-14 membered heterocycloalkenyl, monocyclic aryl, or monocyclic heteroaryl;
- the cyclic moiety being optionally substituted with alkyl, alkenyl, alkynyl, alkoxy, hydroxyl, hydroxylalkyl, halo, haloalkyl, amino, alkylcarbonyloxy, alkyloxycarbonyl, alkylcarbonyl, alkylsulfonylamino, aminosulfonyl, or alkylsulfonyl;
- each of X1 and X2, independently, is O or S;
- Y1 is —CH2—, —O—, —S—, —N(Ra)—, —N(Ra)—C(O)—O—, O—C(O)—N(Ra)—, —N(Ra)—C(O)—N(Rb)—, —C(O)—O—, —O—C(O)—O—, or a bond;
- each of Ra and Rb, independently, being hydrogen, alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, hydroxyl, or haloalkyl;
- Y2 is —CH2—;
- L is an unsaturated straight C4-10 hydrocarbon chain containing at least two conjugated double bonds, at least one triple bond, or at least one double bond and one triple bond;
- said unsaturated hydrocarbon chain being optionally substituted with C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, C1-4 alkoxy, hydroxyl, halo, carboxyl, amino, nitro, cyano, C3-6 cycloalkyl, 3-6 membered heterocycloalkyl, unsubstituted monocyclic aryl, 5-6 membered heteroaryl, C1-4 alkylcarbonyloxy, C1-4 alkyloxycarbonyl, C1-4 alkylcarbonyl, or formyl;
- R1 is hydrogen, alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, hydroxyl, haloalkyl, or an amino protecting group;
- and
- R2 is hydrogen, alkyl, hydroxylalkyl, haloalkyl, or a hydroxyl protecting group;
- or a salt thereof.
A compound of formula (I):
- wherein
- A is a cyclic moiety selected from the group consisting of monocyclic aryl or monocyclic heteroaryl;
- the cyclic moiety being optionally substituted with alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, or amino;
- each of X1 and X2, independently, is O or S;
- Y1 is —CH2—, —O—, —S—, —N(Ra)—, —N(Ra)—C(O)—O—, —O—C(O)—N(Ra)—, —N(Ra)—C(O)—N(Rb)—, —C(O)—O—, —O—C(O)—O—, or a bond;
- each of Ra and Rb, independently, being hydrogen, alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, hydroxyl, or haloalkyl;
- Y2 is —CH2—;
- L is an unsaturated straight C4-10 hydrocarbon chain containing at least two conjugated double bonds, at least one triple bond, or at least one double bond and one triple bond;
- said unsaturated hydrocarbon chain being optionally substituted with C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, C1-4 alkoxy, or amino;
- and
- each of R1 and R2, independently, is hydrogen, alkyl, hydroxylalkyl, or haloalkyl;
- or a salt thereof.
A compound of formula (II):
- wherein
- A is a cyclic moiety selected from the group consisting of monocyclic aryl or monocyclic heteroaryl;
- each of said cyclic moieties being optionally substituted with alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, or amino;
- each of X1 and X2, independently, is O or S;
- each of R1 and R2, independently, is hydrogen, alkyl, hydroxylalkyl, or haloalkyl;
- each of R3, R4, R5, R6, R7, R8, R9 and R10, independently, is hydrogen, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, C1-4 alkoxy, hydroxyl, halo, hydroxylC1-4 alkyl, haloC1-4 alkyl, or amino;
- and
- each of a, b, c, d, and e, independently, is 0 or 1, and f is 1;
- provided that at least one of b, c, d, and e is not zero;
- or a salt thereof.
A compound of formula (I):
- wherein
- A is a cyclic moiety selected from the group consisting of C3-14 cycloalkyl, 3-14 membered heterocycloalkyl, C4-14 cycloalkenyl, 3-14 membered heterocycloalkenyl, monocyclic aryl, or monocyclic heteroaryl;
- the cyclic moiety being optionally substituted with alkyl, alkenyl, alkynyl, alkoxy, hydroxyl, hydroxylalkyl, halo, haloalkyl, amino, alkylcarbonyloxy, alkyloxycarbonyl, alkylcarbonyl, alkylsulfonylamino, aminosulfonyl, or alkylsulfonyl;
- each of X1 and X2, independently, is O or S;
- Y1 is —CH2—, —O—, —S—, —N(Ra)—, —N(Ra)—C(O)—O—, —O—C(O)—N(Ra)—, —N(Ra)—C(O)—N(Rb)—, —C(O)—O—, —O—C(O)—O—, or a bond;
- each of Ra and Rb, independently, being hydrogen, alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, hydroxyl, or haloalkyl;
- Y2 is —CH2—;
- L is
- —(CH═CH)m— where m is 2 or 3,
- an unsaturated straight C4-10 hydrocarbon chain containing 1-2 double bonds and 1-2 triple bonds,
- an unsaturated straight C4-8 hydrocarbon chain containing 1-2 double bonds and 1-2 triple bonds, or
- —C≡C—(CH═CH)n— where n is 1 or 2,
- L being optionally substituted with C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, or C1-4 alkoxy,
- R1 is hydrogen, alkyl, alkenyl, alkynyl, alkoxy, hydroxylalkyl, hydroxyl, haloalkyl, or an amino protecting group;
- and
- R2 is hydrogen, alkyl, hydroxylalkyl, haloalkyl, or a hydroxyl protecting group;
- or a salt thereof.
Dependencies are inferred from the claim text.