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US 6,187,914 B1Granted
Nucleoside derivatives, and their use in oligonucleotide synthesis
AssigneeCIS Bio International
InventorsRobert Teoule, André Roget, Thierry Livache
Life of this patent
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Abstract
The invention relates to nucleoside derivatives bearing electrolabile protector groupings and their use in an oligonucleotide synthesis method comprising at least one step of electronic deprotection.
Claims14
A method of oligonucleotide synthesis, comprising:
- successive adding nucleotides starting with a first nucleoside attached to a solid support, wherein each addition of a nucleotide comprises the cleavage of the protecting group for the 5′-OH function of the nucleotide or of the preceding nucleoside, and the coupling of the nucleotide to be added, to the deprotected 5′-OH function,
- wherein at least one of addition of a nucleotide is carried out with a nucleoside derivative represents by the formula (I), and wherein the cleavage of the protecting group for the 5′-OH function of the nucleotide represented by formula (I) is carried out by an electrochemical reaction,
- wherein
- R1 represents:
- an electrolabile group represented by formula (IIa):
- in which R4 represents an NO2 group and R5 represents a hydrogen atom, a linear or branch C1 to C10 alkyl group, a group
- or a group
- where R′ represents a linear or branched C1 to C10 alkyl group, or a group —O—R′ where R′ represents a linear or branched C1 to C10 alkyl group, or alternatively
- an electrolabile group represented by formula (IIb):
- in which one of the groups Ra, Rb or Rc represents a phenyl group, or a substituted phenyl group, and the other two represent hydrogen atoms,
- R2 represents a hydrogen atom, or a phosphoramidite, phosphonate or phosphotriester group;
- R3 represents a hydrogen atom, a hydroxyl radical, a substituted hydroxyl radical or a halogen,
- B represents a radical derived from a purine or a pyrimidine base represented by one of the following formulae:
- wherein R6 represents a protecting group for the amine function, other than an isobutyryl or phenylpropionyl group, represented by one of the formulae (VII), (VIII) or (IX) below:
- in which R9 and R11, which may be identical or different, represent a hydrogen atom, or a C1-C10 alkoxy or alkyl group, R12 represents a linear or branched C1-C10 alkyl radical, and R10 is represented by the formula:
- R7 represents a protecting group for the amine function, other than a phenylpropionyl group, represented by one of the formulae (VII), (VIII) or (IX) defined above;
- R8 represents a protecting group for the amine function, other than an isobutyryl, phenylpropionyl or phenoxyacetyl group, corresponding to one of the formulae (VII), (VIII) or (IX) defined above;
- with the exception of the derivatives in which R1 is an electrolabile group represented by formula (IIa) in which R4 represents an NO2 group and R5 a hydrogen atom, and B is represented by formula (III).
15 more elements
A nucleoside derivative represented by formula (I):
- wherein
- R1 represents:
- an electrolabile group represented by formula (IIa):
- in which R4 represents an NO2 group and R5 represents a hydrogen atom, a linear or branched C1 to C10 alkyl group, a group
- or a group
- where R′ represents a linear or branched C1 to C10 alkyl group, or a group —O—R′ where R′ represents a linear or branched C1 to C10 alkyl group, or alternatively
- an electrolabile group represented by formula (IIb):
- in which one of the groups Ra, Rb or Rc represents a phenyl group, or a substituted phenyl group, and the other two represent hydrogen atoms,
- R2 represents a hydrogen atom, or a phosphoramidite, phosphonate or phosphotriester group;
- R3 represents a hydrogen atom, a hydroxyl radical, a substituted hydroxyl radical or a halogen,
- B represents a radical derived from a purine or a pyrimidine base represented by one of the following formulae:
- wherein R6 represents a protecting group for the amine function, other than an isobutyryl or phenylpropionyl group, represented by one of the formulae (VII), (VIII) or (IX) below:
- in which R9 and R11, which may be identical or different, represent a hydrogen atom, or a C1-C10 alkoxy or alkyl group, R12 represents a linear or branched C1C10 alkyl radical, and R10 is represented by the formula:
- R7 represents a protecting group for the amine function, other than a phenylpropionyl group, represented by one of the formulae (VII), (VIII) or (IX) defined above;
- R8 represents a protecting group for the amine function, other than an isobutyryl, phenylpropionyl or phenoxyacetyl group, corresponding to one of the formulae (VII), (VIII) or (IX) defined above;
- with the exception of the derivatives in which R1 is an electrolabile group of formula (IIa) in which R4 represents an NO2 group and R5 a hydrogen atom, and B corresponds either to the formula (III), or to the formula (IV) in which R6 is a benzoyl group.
13 more elements
Dependencies are inferred from the claim text.