Method of nucleic acid sequence selection
AssigneeLife Technologies Corporation
InventorsWu-Bo Li, Christian E. Gruber, Joel A. Jessee, Jhy-Jhu Lin
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Abstract
The present invention provides a method for the rapid isolation and recovery of a desired target DNA or RNA molecules from a mixture or library containing such molecules. The method involves the use of biotinylated probes and enzymatic repair-cleavage to eliminate undesired library members from a sample.
Claims44
A method for recovering a desired target nucleic acid molecule from an initial mixture or library of nucleic acid molecules containing said molecule, wherein said method comprises the steps:
- (A) (1) where said initial mixture or library is composed of single-stranded nucleic acid molecules, performing step (B);
- or (2) where said initial mixture or library is composed of double-stranded nucleic acid molecules treating said double-stranded nucleic acid molecules to render such molecules single-stranded, then performing step (B);
- (B) incubating the single-stranded nucleic acid molecules of said mixture or library in the presence of a haptenylated nucleic acid probe molecule, said probe molecule comprising a unique nucleotide sequence complementary to a nucleotide sequence of said desired target molecule;
- said incubation being under conditions sufficient to permit said probe to hybridize to said desired target molecule and to thereby generate a hybridized molecule wherein said desired target molecule is bound to said probe;
- (C) capturing said hybridized molecule of step (B) by incubating said hybridized molecule in the presence of a binding ligand of the hapten of said haptenylated probe, said binding ligand being conjugated to a support;
- said incubation being sufficient to permit said hybridized molecule to become bound to said binding ligand of said support;
- (D) separating said bound hybridized desired target molecule from unbound nucleic acid molecules;
- and
- (E) recovering said desired target molecule from said support.
A method for recovering a desired target nucleic acid molecule from a sample comprising the steps:
- (A) incubating said sample in the presence of a haptenylated nucleic acid probe molecule, said probe molecule comprising a unique nucleotide sequence complementary to said desired target molecule;
- said incubation being under conditions sufficient to permit said probe to hybridize to said desired target molecule and to thereby generate a hybridized molecule wherein the desired target molecule is bound to said probe;
- (B) capturing said hybridized molecule of step (A) by incubating said hybridized molecule in the presence of a binding ligand of the hapten of said haptenylated probe, said binding ligand being conjugated to a support;
- said incubation being, sufficient to permit said hybridized molecule to become bound to said binding ligand of said support;
- (C) separating said bound hybridized desired target molecule from unbound nucleic acid molecules;
- (D) incubating said desired target molecule of step (C) in the presence of a primer nucleic molecule complementary to a sequence of the desired target molecule;
- said incubation being under conditions sufficient to generate a double stranded desired target molecule;
- (E) releasing said double stranded target molecule from said solid support;
- and
- (F) transforming said double stranded desired target molecule of step (D) into a host cell.
Dependencies are inferred from the claim text.