# US 5,707,810 A · Method of diagnosing renal tissue damage or disease

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- Number: US 5,707,810 A
- Document ID: US5707810A
- Status: Granted
- Kind: A
- Application number: 08/643,563
- Filed: 1996-05-06
- Granted: 1998-01-13
- Earliest claimed: 1991-03-11
- Assignees: Creative BioMolecules, Inc.
- Inventors: John E. Smart; Hermann Oppermann; Engin Ozkaynak; Thangavel Kuberasampath; David C. Rueger; Roy H. L. Pang; Charles M. Cohen
- Web page: https://patentgrep.com/patent/US5707810A

## CPC

- G01N 33/74: involving hormones {or other non-cytokine intercellular protein regulatory factors such as growth factors, including receptors to hormones and growth factors}
- A61K 38/17: from animals; from humans {(enzyme inhibitors A61K38/005)}
- A61K 38/1703: {from vertebrates}
- A61K 38/1875: {Bone morphogenic factor; Osteogenins; Osteogenic factor; Bone-inducing factor}
- A61L 27/227: {Other specific proteins or polypeptides not covered by A61L27/222, A61L27/225 or A61L27/24}
- A61L 27/24: Collagen
- C07K 14/51: Bone morphogenetic factor; Osteogenins; Osteogenic factor; Bone-inducing factor
- C07K 14/625: Extraction from natural sources
- C07K 16/22: against growth factors {; against growth regulators}
- C12Q 1/6881: for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
- G01N 33/6893: {related to diseases not provided for elsewhere}
- A61F 2310/00365: Proteins; Polypeptides; Degradation products thereof
- C12Q 2600/158: Expression markers
- G01N 2500/10: involving cells
- G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q)
- A61K: PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES (devices or methods specially adapted for bringing pharmaceutical products into particular physical or administering forms A61J3/00; chemical aspects of, or use of materials for deodorisation of air, for disinfection or sterilisation, or for bandages, dressings, absorbent pads or surgical articles A61L; soap compositions C11D)
- A61L: METHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES (preservation of bodies or disinfecting characterised by the agents employed A01N; preserving, e.g. sterilising, food or foodstuffs A23; preparations for medical, dental or toiletry purposes A61K)
- C07K: PEPTIDES (peptides in foodstuffs A23; obtaining protein compositions for foodstuffs, working-up proteins for foodstuffs A23J; preparations for medicinal purposes A61K; peptides containing beta-lactam rings C07D; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, C07D; ergot alkaloids of the cyclic peptide type C07D519/02; macromolecular compounds having statistically distributed amino acid units in their molecules, i.e. when the preparation does not provide for a specific; but for a random sequence of the amino acid units, homopolyamides and block copolyamides derived from amino acids C08G69/00; macromolecular products derived from proteins C08H1/00; preparation of glue or gelatine C09H; single cell proteins, enzymes C12N; genetic engineering processes for obtaining peptides C12N15/00; compositions for measuring or testing processes involving enzymes C12Q; investigation or analysis of biological material G01N33/00)
- C12Q: MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS (immunoassay G01N33/53); COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- A61F: FILTERS IMPLANTABLE INTO BLOOD VESSELS; PROSTHESES; DEVICES PROVIDING PATENCY TO, OR PREVENTING COLLAPSING OF, TUBULAR STRUCTURES OF THE BODY, e.g. STENTS; ORTHOPAEDIC, NURSING OR CONTRACEPTIVE DEVICES; FOMENTATION; TREATMENT OR PROTECTION OF EYES OR EARS; BANDAGES, DRESSINGS OR ABSORBENT PADS; FIRST-AID KITS (dental prosthetics A61C)

## Abstract

In one aspect, the present invention provides a method of diagnosing renal tissue damage or disease by measuring endogenous expression of OP-1 by renal tissue of a mammal (e.g., a human) in which a depression of endogenous expression relative to undamaged or undiseased mammalian renal tissue indicates a diagnosis that the mammal is afflicted with renal tissue damage or disease. Also disclosed are methods of diagnosing renal tissue damage or disease in a mammal. The methods involve detecting and/or measuring the expression of the OP-1 (BMP-7) gene or protein in the mammal. Depression of OP-1 expression may be used to diagnose renal tissue damage or disease.

## Claims

### Claim 1

A method of diagnosing renal tissue damage or disease comprising the step of measuring endogenous expression of OP-1 by renal tissue of a mammal, wherein a depression of said endogenous expression relative to undamaged or undiseased mammalian renal tissue indicates a diagnosis that said mammal is afflicted with said damage or disease.

### Claim 2 (depends on 1)

The method of claim 1 wherein said endogenous expression is measured by detecting OP-1 mRNA in renal tissue of said mammal.

### Claim 3 (depends on 1)

The method of claim 1 wherein said endogenous expression is measured by detecting OP-1 protein produced by renal tissue of said mammal.

### Claim 4 (depends on 3)

The method of claim 3 wherein said endogenous expression is measured by detecting OP-1 protein circulating in said mammal.

### Claim 5 (depends on 4)

The method of claim 4 wherein said endogenous expression is measured using an antibody specific for said OP-1 protein.

### Claim 6 (depends on 1)

The method of claim 1 wherein a depression of said endogenous expression relative to undamaged or undiseased mammalian renal tissue indicates that said mammal is afflicted with renal tissue degeneration.

### Claim 7 (depends on 6)

The method of claim 6 wherein a depression of said endogenous expression relative to undamaged or undiseased mammalian renal tissue indicates that said mammal is afflicted with kidney disease.

### Claim 8 (depends on 1)

The method of claim 1 wherein said mammal is human.

### Claim 9

A method of diagnosing renal tissue damage or disease comprising the steps of:
(a) contacting a sample of mammalian renal tissue with an agent for specifically detecting endogenous expression of OP-1 in said tissue;
(b) detecting whether OP-1 is expressed endogenously in said tissue; and
(c) diagnosing said damage or disease if said expression is absent.

### Claim 10

A method of diagnosing renal tissue damage or disease comprising the steps of:
(a) contacting a sample of mammalian renal tissue with an agent for specifically detecting endogenous expression of OP-1 in said tissue;
(b) detecting a level of endogenous expression of OP-1 in said tissue; and
(c) comparing said level of endogenously expressed OP-1 in said tissue with a reference level of OP-1 endogenously expressed in undamaged or undiseased mammalian renal tissue to diagnose said damage or disease.

### Claim 11 (depends on 9, 10)

The method of claim 9 or 10 wherein said agent is a nucleic acid probe that hybridizes specifically with RNA transcribed from an OP-1 gene present in cells of said tissue.

### Claim 12 (depends on 11)

The method of claim 11 wherein said probe hybridizes specifically with RNA encoding an OP-1 polypeptide.

### Claim 13 (depends on 12)

The method of claim 12 wherein said probe hybridizes specifically with RNA encoding a nonconserved fragment of said OP-1 polypeptide.

### Claim 14 (depends on 13)

The method of claim 13 wherein said fragment is located N-terminal to a conserved C-terminal seven-cysteine domain of a mature OP-1 polypeptide.

### Claim 15 (depends on 13)

The method of claim 13 wherein said fragment is located in the prodomain of said OP-1 polypeptide.

### Claim 16 (depends on 11)

The method of claim 11 wherein said probe hybridizes specifically with RNA transcribed from a 3' noncoding region immediately following the stop codon of said OP-1 gene.

### Claim 17 (depends on 11)

The method of claim 11 comprising the additional step of extracting poly(A)+RNA from said sample, said agent being contacted in step (a) with said poly(A)+RNA.

### Claim 18 (depends on 17)

The method of claim 17 comprising the further additional step of blotting said poly(A)+RNA onto a nitroceilulose membrane.

### Claim 19 (depends on 18)

The method of claim 18 comprising the still further additional step of electrophoretically fractionating said poly(A)+RNA prior to said step of blotting.

### Claim 20 (depends on 19)

The method of claim 19 wherein said nucleic acid probe hybridizes specifically with a 4.0, 2.4, 2.2 or 1.8 kb RNA transcript of said OP-1 gene.

### Claim 21 (depends on 11)

The method of claim 11 comprising the additional steps of:
(a) contacting a sample of said mammalian renal tissue with a control nucleic acid probe that hybridizes specifically with RNA transcribed from a gene expressed uniformly in mammalian tissues;
(b) detecting a level of expression of said gene in said tissue; and
(c) comparing the endogenous expression level of OP-1 with the expression level of said gene.

### Claim 22 (depends on 21)

The method of claim 21 comprising the further additional step of comparing the relative expression levels of OP-1 and said gene in said tissue, with the relative expression levels of OP-1 and said gene in undamaged or undiseased mammalian renal tissue.

### Claim 23 (depends on 21)

The method of claim 21 wherein said gene is transcriptional elongation factor.

### Claim 24 (depends on 9, 10)

The method of claim 9 or 10 wherein said mammalian renal tissue is human renal tissue.

### Claim 25 (depends on 24)

The method of claim 24 wherein said tissue is obtained from a human afflicted with renal tissue damage.

### Claim 26 (depends on 25)

The method of claim 25 wherein said human is afflicted with renal tissue degeneration.

### Claim 27 (depends on 26)

The method of claim 26 wherein said human is afflicted with kidney disease.
