Sulfonated derivatives of 7-aminocoumarin
AssigneeMolecular Probes, Inc.
InventorsHui-Ying Wang, Wai-Yee Leung, Fei Mao
Life of this patent
Estimating the term…
Abstract
The present invention describes 7-aminocoumarin dyes that are substituted one or more times at the 3-, 6- and/or 8-positions by a sulfonic acid or a salt of a sulfonic acid, said dyes being useful as fluorescent probes or in the preparation of enzyme substrates, caged probes, or adducts with reducing sugars. The dyes of the invention optionally possess a reactive group useful for preparing fluorescent conjugates, which conjugates and methods for their preparation are described herein.
Claims27
A compound of the formula ##STR44## wherein R.sup.5 is H;
- R.sup.6 is H, methyl, halogen, or SO.sub.3 X;
- R.sup.7 is NR.sup.1 R.sup.2 ;
- wherein
- R.sup.1 and R.sup.2 are independently H, C.sub.1 -C.sub.18 alkyl, C.sub.6 -C.sub.18 aryl, C.sub.1 -C.sub.18 alkanoyl, C.sub.7 -C.sub.18 arylalkanoyl;
- or R.sup.1 in combination with R.sup.2 forms a saturated 5- or 6-membered heterocycle that is a piperidine, a morpholine, a pyrrolidine or a piperazine;
- or R.sup.2 is H and R.sup.1 is a radical formed by a removal of the hydroxyl group from the carboxylic acid of an amino acid or from the carboxylic acid of the carboxy-terminal amino acid of a linear peptide consisting of 2-6 amino acids;
- or R.sup.1 is a 2-nitrobenzyloxycarbonyl of the formula ##STR45## wherein R.sup.9 and R.sup.10 are H, C.sub.1 -C.sub.6 alkoxy, or R.sup.9 and R.sup.10 taken in combination are --O--CH.sub.2 --O--;
- and
- R.sup.11 is H, CH.sub.3, a carboxylic acid or a biologically compatible salt of a carboxylic acid;
- or R.sup.7 is a nitrogen atom that is linked by a single or double covalent bond to the anomeric carbon of a mono- or polysaccharide and formally replaces the anomeric oxygen atom of the mono- or polysaccharide;
- R.sup.8 is H, halogen or SO.sub.3 X;
- X is H, or a biologically compatible cation;
- R.sup.3 is H, SO.sub.3 X, halogen, CN, NO.sub.2, or --L--R.sub.X or --L--S.sub.C ;
- R.sup.4 is H, CN, C.sub.1 -C.sub.18 alkyl, C.sub.1 -C.sub.18 perfluoroalkyl, CH.sub.2 SO.sub.3 X;
- or --L--R.sub.X or --L--S.sub.C ;
- wherein
- each L is a single covalent bond, or L is a covalent linkage having 1-24 nonhydrogen atoms selected from the group consisting of C, N, O and S and is composed of any combination of single, double, triple or aromatic carbon-carbon bonds, carbon-nitrogen bonds, nitrogen-nitrogen bonds, carbon-oxygen bonds and carbon-sulfur bonds;
- R.sub.X is a reactive group;
- and
- S.sub.C is a conjugated substance;
- provided that at least one of R.sup.3, R.sup.6 or R.sup.8 is SO.sub.3 X.
A method of detecting a complementary member of a specific binding pair in a sample, comprising:
- a) adding to said sample a dye-conjugate of a first member of a specific binding pair for which there is a complementary member, where said first member of a specific binding pair is attached to one or more dye molecules, which may be the same or different, having the formula ##STR47## wherein R.sup.5 is H;
- R.sup.6 is H, methyl, halogen, or SO.sub.3 X;
- R.sup.7 is NR.sup.1 R.sup.2 ;
- wherein
- R.sup.1 and R.sup.2 are independently H, C.sub.1 -C.sub.18 alkyl;
- or R.sup.1 in combination with R.sup.2 forms a saturated 5- or 6-membered heterocycle that is a piperidine, a morpholine, a pyrrolidine or a piperazine;
- or R.sup.1 is a 2-nitrobenzyloxycarbonyl of the formula ##STR48## wherein R.sup.9 and R.sup.10 are H, C.sub.1 -C.sub.6 alkoxy, or R.sup.9 and R.sup.10 taken in combination are --O--CH.sub.2 --O--;
- and
- R.sup.11 is H, CH.sub.3, a carboxylic acid or a biologically compatible salt of a carboxylic acid;
- R.sup.8 is H, halogen or SO.sub.3 X;
- X is H, or a biologically compatible cation;
- R.sup.3 is H, SO.sub.3 X, halogen, CN, NO.sub.2, or --L--S.sub.C ;
- R.sup.4 is H, CN, C.sub.1 -C.sub.18 alkyl, C.sub.1 -C.sub.18 perfluoroalkyl, CH.sub.2 SO.sub.3 X;
- or --L--S.sub.C ;
- wherein
- each L is a single covalent bond, or L is a covalent linkage having 1-24 nonhydrogen atoms selected from the group consisting of C, N, O and S and is composed of any combination of single, double, triple or aromatic carbon-carbon bonds, carbon-nitrogen bonds, nitrogen-nitrogen bonds, carbon-oxygen bonds and carbon-sulfur bonds;
- and
- S.sub.C is a conjugated substance that is said first member of a specific binding pair;
- provided that at least one of R.sup.3, R.sup.6 or R.sup.8 is SO.sub.3 X;
- and
- provided that one of R.sup.3 and R.sup.4 is --L--S.sub.C ;
- b) allowing sufficient time for the dye-conjugate to form a complex with the complementary member, said complex exhibiting a detectable optical response;
- and
- c) detecting said complex to locate the complementary member.
A method of staining a sample, comprising:
- a) adding to said sample a compound of the formula ##STR49## wherein R.sup.5 is H;
- R.sup.6 is H, methyl, halogen, or SO.sub.3 X;
- R.sup.7 is NR.sup.1 R.sup.2 ;
- wherein
- R.sup.1 and R.sup.2 are independently H, C.sub.1 -C.sub.18 alkyl;
- or R.sup.1 in combination with R.sup.2 forms a saturated 5- or 6-membered heterocycle that is a piperidine, a morpholine, a pyrrolidine or a piperazine;
- or R.sup.2 is H and R.sup.1 is a radical formed by a removal of the hydroxyl group from the carboxylic acid of an amino acid or from the carboxylic acid of the carboxy-terminal amino acid of a linear peptide consisting of 2-6 amino acids;
- or R.sup.1 is a 2-nitrobenzyloxycarbonyl of the formula ##STR50## wherein R.sup.9 and R.sup.10 are H, C.sub.1 -C.sub.6 alkoxy, or R.sup.9 and R.sup.10 taken in combination are --O--CH.sub.2 --O--;
- and
- R.sup.11 is H, CH.sub.3, a carboxylic acid or a biologically compatible salt of a carboxylic acid;
- R.sup.8 is H, halogen or SO.sub.3 X;
- X is H, or a biologically compatible cation;
- R.sup.3 is H, SO.sub.3 X, halogen, CN, NO.sub.2, or --L--S.sub.C ;
- R.sup.4 is H, CN, C.sub.1 -C.sub.18 alkyl, C.sub.1 -C.sub.18 perfluoroalkyl, CH.sub.2 SO.sub.3 X;
- or --L--S.sub.C ;
- wherein
- each L is a single covalent bond, or L is a covalent linkage having 1-24 nonhydrogen atoms selected from the group consisting of C, N, O and S and is composed of any combination of single, double, triple or aromatic carbon-carbon bonds, carbon-nitrogen bonds, nitrogen-nitrogen bonds, carbon-oxygen bonds and carbon-sulfur bonds;
- and
- S.sub.C is a conjugated substance;
- provided that at least one of R.sup.3, R.sup.6 or R.sup.8 is SO.sub.3 X;
- in an amount sufficient to produce an optical response when said sample is illuminated at an appropriate wavelength.
Dependencies are inferred from the claim text.