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US 5,608,046 AGranted
Conjugated 4'-desmethyl nucleoside analog compounds
AssigneeIsis Pharmaceuticals, Inc.
InventorsPhillip D. Cook, Kelly Teng
Life of this patent
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Abstract
Tetrahydrofuranyl compounds are provided that are functionalized to include pendant conjugate groups, and which are useful in diagnostic assays and as research reagents. Novel intermediates for the synthesis of the compounds are also provided.
Claims30
A compound having the structure:
- ##STR13## wherein:
- R.sub.L is a group of formula:
- R.sub.C --[Y].sub.e --Z--
- wherein:
- Z is O, S or HN;
- Y is a bivalent linker;
- e is 0 or 1;
- R.sub.C is alkyl, alkenyl, alkynyl, a polyamine, a polyether, a polythioether, a steroid molecule, a reporter molecule, an aromatic lipophilic molecule, a non-aromatic lipophilic molecule, a reporter enzyme, a peptide, a protein, a water soluble vitamin, a lipid soluble vitamin, a carbohydrate, a terpene molecule, a phospholipid, an intercalator, a cell receptor binding molecule, a crosslinking agent, or a porphyrin;
- B.sub.x is a nucleobase;
- X is H, OH, O-alkyl, O-alkoxyalkyl, O-alkylamino, or F;
- Q is O, S, CH.sub.2, CHF or CF.sub.2 ;
- and
- R.sub.D is H, hydroxyl, an activated phosphorous group, a nucleoside, an activated nucleotide, a nucleotide, an oligonucleotide, an oligonucleoside or a protected derivative thereof.
10 more elements
The compound having the structure:
- ##STR14## wherein:
- L is a group of formula:
- R.sub.7 --[W].sub.a --[S--(CH.sub.2).sub.q ].sub.u --[HN--(CH.sub.2).sub.n ].sub.t --.sub.[O--(CH.sub.2).sub.m ].sub.v --Z--
- wherein:
- t, u and v are each independently integers from 0 to 200;
- m, n and q are each independently integers from 1 to 4;
- Z is S, O or HN;
- R.sub.7 is R.sub.c, H, or a protecting group;
- B.sub.x is a nucleobase;
- X is H, OH, O-alkyl, O-alkoxylalkyl, O-alkylamino, or F;
- Q is O;
- W is the residue of a linking moiety, said linking moiety being selected from the group consisting of acid chlorides, anhydrides, cyclic anhydrides, alkyl halides, organometallics, chloroformates, isocynates, hydrazines, acids, hydroxylamines, semicarbazides, thiosemicarbazides, hydrazones, hydrazides, trityl thiol, oximes, hydrazide-hydrazones, semicarbazones and semithiocarbazones;
- a is 0 or 1;
- R.sub.D is H, hydroxyl, an activated phosphorous group, a nucleoside, an activated nucleotide, a nucleotide, an oligonucleotide, an oligonucleoside or a protected derivative thereof;
- R.sub.C is alkyl, alkenyl, alkynyl, a polyamine, a polyether, a polythioether, a steroid molecule, a reporter molecule, an aromatic lipophilic molecule, a non-aromatic lipophilic molecule, a reporter enzyme, a peptide, a protein, a water soluble vitamin, a lipid soluble vitamin, a carbohydrate, a terpene molecule, a phospholipid, an intercalator, a cell receptor binding molecule, a crosslinking agent, or a porphyrin;
- and
- provided that t, u and v are not all simultaneously 0.
14 more elements
The compound having the structure:
- ##STR15## wherein:
- R.sub.C is O-alkyl, O-alkenyl, O-alkynyl, a polyamine, a polyether, a steroid molecule, a reporter molecule, an aromatic lipophilic molecule, a non-aromatic lipophilic molecule, a reporter enzyme, a peptide, a protein, a water soluble vitamin, a lipid soluble vitamin, a carbohydrate, a terpene molecule, a phospholipid, an intercalator, a cell receptor binding molecule, a crosslinking agent, or a porphyrin;
- B.sub.x is a nucleobase;
- X is H, OH, O-alkyl, O-alkoxyalkyl, O-alkylamino, or F;
- Q is O, S, CH.sub.2, CHF or CF.sub.2 ;
- and
- R.sub.D is H, hydroxyl, an activated phosphorous group, a nucleoside, an activated nucleotide, a nucleotide, an oligonucleotide, an oligonucleoside or a protected protected derivative thereof.
4 more elements
The compound having the structure:
- ##STR16## wherein:
- J is a leaving group;
- B.sub.x is a nucleobase;
- X is H, OH, O-alkyl, O-alkoxylalkyl, O-alkylamino, or F;
- Q is O, S, CH.sub.2, CHF or CF.sub.2 ;
- and
- R.sub.D is H, hydroxyl, an activated phosphorous group, a nucleoside, an activated nucleotide, a nucleotide, an oligonucleotide, an oligonucleoside or a protected derivative thereof.
4 more elements
Dependencies are inferred from the claim text.