A control system for operating a drive assembly of a ship having at least one engine (1) which, via a transmission (3) with at least one adjustable clutch (4) for forward and reverse movements, drives a propeller shaft (6), control and sensor means (5, 8, 9, 10, 11, 12, 16, 17, 27) for controlling at least one of engine speed and slipping degree of said clutch (4), at least one control station (15) with control means (18-26) for adjusting travel direction and speed of the ship by actuating at least one steering lever (27) and control electronics (12) for processing input and output signals, characterized in that during operation in a low gear, trolling mode of said drive assembly, said clutch (4) becomes completely closed after engagement of the travel direction, and the acceleration phase is terminated by transmitting to said control electronics (12) a control signal which indicates that a defined speed of the ship has been reached thereby adjusting the speed of said propeller shaft (6) to a trolling speed.