Apparatus for assessing relatedness from autoradiograms
AssigneeUniversity of Iowa Research Foundation
InventorsDavid R. Soll, Holly J. Hugart, Edward R. Voss
Life of this patent
Estimating the term…
Abstract
Apparatus and method for assessing relatedness from autoradiograms. A scanner reads and digitizes the one or more banded lanes of an autoradiogram and communicates the information to a digital computer. The information is processed and analyzed to rationalize the banded lanes with a standard. Similarity coefficients and dendrograms of relatedness are generated.
Claims4
A computer implemented method of assessing relatedness from autoradiograms including one or more banded lanes having a vertical, lengthwise dimension and a horizontal, widthwise dimension, each banded lane being distorted in both of the dimensions, the method comprising the steps of:
- (a) digitizing an autoradiogram, including the banded lanes;
- (b) averaging in the computer said digitized lanes over a substantial portion of the widthwise dimension to identify the bands of said digitized lanes;
- (c) comparing in the computer said identified bands to reference bands of a standard banded lane and generating in the computer a set of conserved bands that includes those identified bands that generally correspond to said reference bands;
- (d) dividing in the computer said digitized lanes into sections separated at vertical positions between said conserved bands, each of said sections having a length and a position;
- (e) aligning in the computer one or more of said sections to straighten each banded lane along a vertical axis;
- (f) adjusting in the computer the length and position of one or more of said sections to bring said conserved bands into horizontal alignment with said reference bands;
- (g) generating in the computer similarity coefficients between said lanes;
- and
- (h) generating dendograms based on said similarity coefficients.
A computer implemented method of assessing relatedness from autoradiograms including one or more lanes having a background of generally low intensity and a plurality of bands of higher intensity than the background, wherein the banded lanes have a vertical, lengthwise dimension and a horizontal widthwise dimension, the method comprising the steps of:
- (a) digitizing an autoradiogram, including the banded lanes;
- (b) averaging in the computer said digitized lanes over a substantial portion of the widthwise dimension to create a tracing of the averaged intensity of said lane along the lengthwise dimension and to identify the bands of each lane;
- (c) comparing in the computer said identified bands to reference bands of a standard banded lane and generating in the computer a set of conserved bands that includes those identified bands that generally correspond to said reference bands;
- (d) classifying in the computer said conserved bands by relative intensity into a plurality of band classes;
- (e) adjusting in the computer the intensity of bands on each of said band classes in proportion with the intensity of the background of each lane relative to the background of a reference standard and in proportion with the intensity of said conserved bands of each lane relative to the intensity of corresponding bands of said reference standard;
- (f) generating in the computer similarity coefficients between said lanes based on the position and class range of each of said conserved bands;
- and
- (h) generating dendograms based on said similarity coefficients.
Dependencies are inferred from the claim text.