# US 5,352,891 A · Method and apparatus for estimating molecular mass from electrospray spectra > Agents: this data is available as JSON from the patentgrep API and MCP server — see https://patentgrep.com/llms.txt - Number: US 5,352,891 A - Document ID: US5352891A - Status: Granted - Kind: A - Application number: 08/092,845 - Filed: 1993-07-16 - Granted: 1994-10-04 - Earliest claimed: 1993-07-16 - Assignees: The Regents of the University of California - Inventors: Curtis A. Monnig; Jeffrey J. Hagen - Web page: https://patentgrep.com/patent/US5352891A ## CPC - H01J 49/0036: {Step by step routines describing the handling of the data generated during a measurement} - H01J 49/165: {Electrospray ionisation} - H01J: ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS (spark-gaps H01T; electric arc lamps H05B31/00; particle accelerators H05H) ## Abstract The production of mass spectra of chemical compounds of high molecular weights having a multiplicity of peaks is improved by generating an enhanced mass spectrum from the observed mass-to-charge spectrum. The intensity at each point within the enhanced spectrum is based upon a plurality of successive discrete peaks within the mass-to-charge spectrum. The intensities of the sequence of mass-to-charge peaks are combined to form a normalized product which is the new enhanced intensity at an assumed molecular weight. The intensities of the mass-to-charge spectrum at each integral fraction of the assumed molecular weight are included in the product. Only those intensities above a certain predetermined threshold, however, are included to avoid transfer of noise into the enhanced spectrum. Signal-to-noise ratio can in some applications be improved by including in the product all portions within the discrete peaks in the mass-to-charge spectrum which are contained within a window around each of the discrete peaks. ## Claims ### Claim 1 A method for identifying the molecular weight of distinct polyatomic parent molecular species in a mass spectrometer comprising the steps of: generating populations of multiply charged ions on said distinct polyatomic parent molecular species, the number of charges on said ions defining each of said ion's charge state number, said population of ions comprising a plurality of subpopulations, each of said subpopulations corresponding to an intensity peak in a mass-to-charge spectrum of said molecular species, said population including one of said subpopulations for at least one possible integral value of a charged state number; analyzing subpopulations in said mass spectrometer to produce said mass-to-charge spectrum; determining a mass-to-charge range to be used with said mass-to-charge spectrum; determining a range of assumed masses to be used within an enhanced mass spectrum; and generating for each assumed mass in said enhanced mass spectrum an intensity equal in magnitude to the product of all of said intensity peaks of said subpopulations of said assumed mass, whereby determination of said molecular weight of said polyatomic parent molecule species is more readily discernible. ### Claim 2 (depends on 1) The method of claim 1 where said step of generating said enhanced intensity comprises the step of generating an enhanced intensity, I[M], equal magnitude to a product modeled on the equation: I(M)=[I[M/x+m.sub.c ]*I[M/(x+1)+m.sub.c ]*I[M/(x+2)+m.sub.c ]* . . . *I[M/y+m.sub.c ]]/rms.sup.n where M is the molecular mass assumed in said enhanced spectrum, I[M/n] is said intensity of said subpopulations at a mass-to-charge value of n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, where rms is root mean square of said selected range of said mass-to-charge spectrum, and where n is the number of intensity peaks within said product. ### Claim 3 (depends on 1) The method of claim 1 wherein said step of generating said enhanced spectrum only uses intensity peaks of said subpopulation within said mass-to-charge spectrum greater than a predetermined threshold. ### Claim 4 (depends on 2) The method of claim 2 wherein said step of generating said enhanced spectrum only uses intensity peaks of said subpopulation within said mass-to-charge spectrum greater than a predetermined threshold. ### Claim 5 (depends on 3) The method of claim 3 wherein said predetermined threshold is set at about 0.01% of the maximum intensity found within said mass-to-charge spectrum. ### Claim 6 (depends on 3) The method of claim 3 wherein said predetermined threshold has a characteristic maximum value for each spectrum at which a quality factor, QF, is maximized, said predetermined threshold being set at said maximum value to maximize said quality factor, said quality factor being defined as the ratio of the intensity peaks of said subpopulations at a true molecular mass divided by intensity peaks at mass values other than said true molecular mass. ### Claim 7 (depends on 1) The method of claim 1 wherein said intensity peaks within said mass-to-charge spectrum have a finite width, said enhanced spectrum being generated from said intensity peaks of said subpopulations using said finite width of each said intensity peaks. ### Claim 8 (depends on 7) The method of claim 7 wherein said enhanced spectrum is modeled by the equation: I(M)=X.sub.x *X.sub.x+1 *X.sub.x+2 * . . . *X.sub.y where X.sub.n X.sub.n =[I[m.sub.n -w/2]*I[m.sub.n -w/2+d]*I[m.sub.n -w/2+2d]* . . . *I[m.sub.n +w/2]]/rms.sup.n/d and m.sub.n =M/n+m.sub.c where M is the molecular mass assumed in said enhanced spectrum, X.sub.n is a measure of said intensity of said subpopulations centered at a mass-to-charge value of m.sub.n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, where rms is root mean square of said selected range of said mass-to-charge spectrum, where n is the number of intensity peaks within said product, where w is a calculation window and d is the mass difference at successive points in the mass-to-charge spectrum from which said enhanced spectrum is generated. ### Claim 9 (depends on 3) The method of claim 3 wherein said intensity peaks within said mass-to-charge spectrum have a finite width, said enhanced spectrum being generated for each of said intensity peaks of said subpopulations using said finite width of said intensity peak. ### Claim 10 (depends on 5) The method of claim 5 wherein said intensity peaks within said mass-to-charge spectrum have a finite width, said enhanced spectrum being generated from intensity peaks of said subpopulations using said finite width of said intensity peak. ### Claim 11 (depends on 6) The method of claim 6 wherein said intensity peaks within said mass-to-charge spectrum have a finite width, said enhanced spectrum being generated from intensity peaks of said subpopulations using said finite width of said intensity peak. ### Claim 12 (depends on 1) The method of claim 1 wherein said enhanced spectrum is generated from a data set of data points corresponding to equivalent masses of said polyatomic parent molecular species comprising the steps of: determining a root mean square of said data set; normalizing said data set by dividing each data point by said root mean square of said data set; determining a width, w, of a window; generating a product spectrum where each point of said product spectrum is a product of all the data points within said data set within one half of said window width, w/2, in said normalized spectrum; and generating said enhanced intensity I[M], equal magnitude to a product modeled on the equation: I(M)=[I[M/x+m.sub.c ]*I[M/(x+1)+m.sub.c ]*I[M/(x+2)+m.sub.c * . . . *I[M/y+m.sub.c ]] where M is the molecular mass assumed in said enhanced spectrum, I[M/n] is said intensity of said product spectrum at a mass-to-charge value of n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, and where n is the number of intensity peaks within said product. ### Claim 13 (depends on 6) The method of claim 6 wherein said enhanced spectrum is modeled by the equation: I(M)=X.sub.x *X.sub.x+1 *X.sub.x+2 * . . . *X.sub.y where X.sub.n X.sub.n =[I[m.sub.n -w/2]*I[m.sub.n -w/2+d]*I[m.sub.n -w/2+2d]* . . . *I[m.sub.n +w/2]]/rms.sup.n/d and m.sub.n =M/n+m.sub.c where M is the molecular mass assumed in said enhanced spectrum, X.sub.n is a measure of said intensity of said subpopulations centered at a mass-to-charge value of m.sub.n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, where rms is root mean square of said selected range of said mass-to-charge spectrum, where n is the number of intensity peaks within said product, where w is a calculation window and d is the mass difference at successive points in the mass-to-charge spectrum from which said enhanced spectrum is generated. ### Claim 14 An improved combination of a mass spectrometer and computer comprising: means for generating a mass spectrum comprised of a sequence of discrete peaks due to multiply charged ions of a distinct polyatomic parent molecular species; means for storing said mass spectrum within said computer; means for generating an enhanced mass spectrum by combining said sequence of discrete peaks due to multiply charged ions of said distinct polyatomic parent molecular species to form an intensity for each assumed mass within said enhanced spectrum, said discrete peaks being combined in a product, whereby analysis of said peaks of said enhanced spectrum to determine the molecular weight of said distinct polyatomic parent molecular species is facilitated. ### Claim 15 (depends on 14) The improved combination of claim 14 where said means for generating said enhanced spectrum combines said sequence of discrete peaks in a normalized product, said product being normalized by the root mean square value of said mass spectrum stored in said computer in a predetermined range from which said enhanced spectrum is generated. ### Claim 16 (depends on 15) The improved combination of claim 15 wherein said means for combining said sequence of discrete peaks in a product combines said products as modeled by the equation: I(M)=[I[M/x+m.sub.c ]*I[M/(x+1)+m.sub.c ]*I[M/(x+2)+m.sub.c ]* . . . *I[M/y+m.sub.c ]]/rms.sup.n where M is the molecular mass assumed in said enhanced spectrum, I[M/n] is said intensity of said subpopulations at a mass-to-charge value of n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, where rms is root mean square of said selected range of said mass-to-charge spectrum, and where n is the number of intensity peaks within said product. ### Claim 17 (depends on 14) The improved combination of claim 14 wherein said means for generating said enhanced spectrum by combining said sequence of discrete peaks in a product combines only those discrete peaks in said product which exceed a predetermined threshold. ### Claim 18 (depends on 14) The improved combination of claim 14 wherein said means for generating said enhanced spectrum by combining said sequence of discrete peaks in a product includes within said product a subsequence of intensities for each of said discrete peaks within a width for each peak. ### Claim 19 (depends on 17) The improved combination of claim 17 wherein said means for generating said enhanced spectrum by combining said sequence of discrete peaks in a product includes within said product a subsequence of intensities for each of said discrete peaks within a width of each peak. ### Claim 20 (depends on 18) The improved combination of claim 18 where said means for generating said enhanced spectrum from said sequence of discrete peaks in a product generates said enhanced intensity as modeled by the equation: I(M)=X.sub.x *X.sub.x+1 *X.sub.x+2 * . . . *X.sub.y where X.sub.n X.sub.n =[I[m.sub.n -w/2]*I[m.sub.n -w/2+d]*I[m.sub.n -w/2+2d]* . . . *I[m.sub.n +w/2]]/rms.sup.n/d and m.sub.n =M/n+m.sub.c where M is the molecular mass assumed in said enhanced spectrum, X.sub.n is a measure of said intensity of said subpopulations centered at a mass-to-charge value of m.sub.n, where x and y are the minimum/maximum number of charges of said charged state number per molecule, where m.sub.c is the mass of a counter ion, where rms is root mean square of said selected range of said mass-to-charge spectrum, where n is the number of intensity peaks within said product, where w is a calculation window and d is the mass difference at successive points in the mass-to-charge spectrum from which said enhanced spectrum is generated.