Method for the enhancement of cell images
AssigneeMcGill University
InventorsChristopher Kenyon, Peter Macklem, David Eidelman
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Abstract
The present invention relates to an image processing method for enhancing the digitised optical image section of a (e.g. substantially transparent biological) specimen and in a particular aspect the boundary outline of a specimen in such an image section thereof. In accordance with the invention a Nomarski image section is smoothed and a gradient of image pixel intensity determined for each pixel thereof. Thereafter each pixel of the smoothed Nomarski image which has an intensity gradient within a reference range is set to zero intensity so as to provide a processed image section.
Claims6
A method of processing one or more raw light microscope optical image sections of a specimen to generate one or more processed optical image sections therefrom, wherein said raw image sections are raw Nomarski optical image sections of the specimen in digitised form such that the raw image sections are each composed of a plurality of digitised pixel points, said method comprising,
- a) subjecting a said raw Nomarski image section and a raw first reference optical image section to one dimensional Gaussian smoothing, in the direction of the Nomarski effect, with a predetermined decay constant so as to obtain a smoothed original image section and a smoothed first reference image section,
- said raw first reference image section being an out of focus optical image section with respect to the specimen, said raw first reference optical image section being a raw Nomarski optical image section in digitised form such that the raw first reference image section is composed of a plurality of digitised pixel points,
- said constant being equal to the thickness in pixel points of a focused boundary of the specimen in a raw second reference Nomarski optical image section thereof, said raw second reference optical image section being a raw Nomarski optical image section in digitised form such that the raw second reference image section is composed of a plurality of digitised pixel points,
- b) determining for each of the smoothed image sections obtained from step a) a gradient of image pixel intensity, in the direction of the Nomarski effect, for all of the pixel points thereof,
- c) determining the maximum and minimum intensity gradient values for the smoothed first reference image section, and
- d) setting to zero, the intensity of each pixel point of the smoothed original image section which has an intensity gradient value within the range defined by the maximum and minimum intensity gradients for the smoothed first reference image so as to obtain a processed digitised optical image section, any remaining pixel points of non zero intensity in the processed image section being feature pixel points.
A method of processing one or more raw light microscope optical image sections of a specimen to generate one or more processed optical image sections therefrom, wherein said raw image sections are raw Nomarski optical image sections of the specimen in digitised form such that the raw image sections are each composed of a plurality of digitised pixel points, said method comprising,
- a) subjecting a said raw Nomarski image section and a raw first reference optical image section to one dimensional derivative exponential filtering, in the direction of the Nomarski effect, with a predetermined decay constant so as to obtain a smoothed original image section and a smoothed first reference image section and to obtain a gradient of intensity, in the direction of the Normarski effect, for all of the pixel points of the smoothed original image section and the smoothed first reference image section,
- said raw first reference image section being an out of focus optical image section with respect to the specimen, said raw first reference optical image section being a raw Nomarski optical image section in digitised form such that the raw first reference image section is composed of a plurality of digitised pixel points,
- said constant being equal to the thickness in pixel points of a focused boundary of the specimen in a raw second reference Nomarski optical image section thereof, said raw second reference optical image section being a raw Nomarski optical image section in digitised form such that the second reference image section is composed of a plurality of digitised pixel points,
- b) determining the maximum and minimum intensity gradient values for the smoothed first reference image section, and
- d) setting to zero, the intensity of each pixel point of the smoothed original image section which has an intensity gradient value within the range defined by the maximum and minimum intensity gradients for the smoothed first reference image so as to obtain a processed digitised optical image section, any remaining pixel points of non zero intensity in the processed image section being feature pixel points.
Dependencies are inferred from the claim text.