Antibodies and uses thereof
AssigneeBiocytogen Pharmaceuticals (Beijing) Co., Ltd.
InventorsSufei Yao, Liu Yang, Chengzhang Shang, Yi Yang, Yuelei Shen
Life of this patent
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Abstract
The anti-PTK7 (protein tyrosine kinase 7) antibodies, antigen-binding fragments thereof, and antibody-drug conjugate (ADC) derived therefrom; anti-TROP2 (trophoblast cell surface antigen 2) antibodies, antigen-binding fragments thereof, and antibody-drug conjugate (ADC) derived therefrom; and anti-PTK7/TROP2 (e. g., multispecific or bispecific) antibodies or antigen-binding fragments thereof, and antibody-drug conjugate (ADC) derived therefrom and uses thereof are disclosed.
Claims178
An antibody or antigen-binding fragment thereof that binds to PTK7 (protein tyrosine kinase 7) comprising:
- a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3, wherein the VH CDR1 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR1 amino acid sequence, the VH CDR2 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR2 amino acid sequence, and the VH CDR3 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR3 amino acid sequence;
- and
- a light chain variable region (VL) comprising CDRs 1, 2, and 3, wherein the VL CDR1 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR1 amino acid sequence, the VL CDR2 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR2 amino acid sequence, and the VL CDR3 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR3 amino acid sequence,
- wherein the selected VH CDRs 1, 2, and 3 amino acid sequences and the selected VL CDRs, 1, 2, and 3 amino acid sequences are one of the following:
- (1) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 4-6, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (2) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 7-9, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (3) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 10-12, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (4) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 13-15, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (5) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 16-18, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (6) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 19-21, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (7) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 22-24, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (8) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 25-27, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3,
- (9) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 28-30, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3,
- (10) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 31-33, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (11) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 34-36, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (12) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 37-39, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (13) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 40-42, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (14) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 43-45, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (15) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 86-88, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- and
- (16) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 89-91, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively.
A nucleic acid comprising a polynucleotide encoding a polypeptide comprising:
- (1) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 4-6, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (2) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 25-27, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (3) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 46 binds to PTK7;
- (4) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 7-9, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (5) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 28-30, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (6) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 47 binds to PTK7;
- (7) an immunoglobulin heavy chain or a fragment thereof comprising a VH comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 10-12, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (8) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 31-33, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (9) an immunoglobulin light chain or a fragment thereof comprising a VL comprising CDRs 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 48 binds to PTK7;
- (10) an immunoglobulin heavy chain or a fragment thereof comprising a VH comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 13-15, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (11) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 34-36, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (12) an immunoglobulin light chain or a fragment thereof comprising a VL comprising CDRs 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 49 binds to PTK7;
- (13) an immunoglobulin heavy chain or a fragment thereof comprising a VH comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 16-18, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (14) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 37-39, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (15) an immunoglobulin light chain or a fragment thereof comprising a VL comprising CDRs 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 50 binds to PTK7;
- (16) an immunoglobulin heavy chain or a fragment thereof comprising a VH comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 19-21, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (17) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 40-42, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (18) an immunoglobulin light chain or a fragment thereof comprising a VL comprising CDRs 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 51 binds to PTK7;
- (19) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 22-24, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (20) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 43-45, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- and
- (21) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 52 binds to PTK7.
- (22) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 86-88, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- (23) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 89-91, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to PTK7;
- and
- (24) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 92 binds to PTK7.
An antibody or antigen-binding fragment thereof that binds to PTK7 comprising
- a heavy chain variable region (VH) comprising an amino acid sequence that is at least 90% identical to a selected VH sequence, and a light chain variable region (VL) comprising an amino acid sequence that is at least 90% identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
- (1) the selected VH sequence is SEQ ID NO:
- 46, and the selected VL sequence is SEQ ID NO:
- 53;
- (2) the selected VH sequence is SEQ ID NO:
- 47, and the selected VL sequence is SEQ ID NO:
- 53;
- (3) the selected VH sequence is SEQ ID NO:
- 48, and the selected VL sequence is SEQ ID NO:
- 53;
- (4) the selected VH sequence is SEQ ID NO:
- 49, and the selected VL sequence is SEQ ID NO:
- 53;
- (5) the selected VH sequence is SEQ ID NO:
- 50, and the selected VL sequence is SEQ ID NO:
- 53;
- (6) the selected VH sequence is SEQ ID NO:
- 51, and the selected VL sequence is SEQ ID NO:
- 53;
- (7) the selected VH sequence is SEQ ID NO:
- 52, and the selected VL sequence is SEQ ID NO:
- 53;
- and
- (8) the selected VH sequence is SEQ ID NO:
- 92, and the selected VL sequence is SEQ ID NO:
- 53.
An antibody or antigen-binding fragment thereof that binds to PTK7 comprising
- a heavy chain variable region (VH) comprising VH CDR1, VH CDR2, and VH CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence;
- and a light chain variable region (VL) comprising VL CDR1, VL CDR2, and VL CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
- (1) the selected VH sequence is SEQ ID NO:
- 46, and the selected VL sequence is SEQ ID NO:
- 53;
- (2) the selected VH sequence is SEQ ID NO:
- 47, and the selected VL sequence is SEQ ID NO:
- 53;
- (3) the selected VH sequence is SEQ ID NO:
- 48, and the selected VL sequence is SEQ ID NO:
- 53;
- (4) the selected VH sequence is SEQ ID NO:
- 49, and the selected VL sequence is SEQ ID NO:
- 53;
- (5) the selected VH sequence is SEQ ID NO:
- 50, and the selected VL sequence is SEQ ID NO:
- 53;
- (6) the selected VH sequence is SEQ ID NO:
- 51, and the selected VL sequence is SEQ ID NO:
- 53;
- (7) the selected VH sequence is SEQ ID NO:
- 52, and the selected VL sequence is SEQ ID NO:
- 53;
- and
- (8) the selected VH sequence is SEQ ID NO:
- 92, and the selected VL sequence is SEQ ID NO:
- 53.
An antibody or antigen-binding fragment thereof that binds to TROP2 (trophoblast cell surface antigen 2) comprising:
- a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3, wherein the VH CDR1 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR1 amino acid sequence, the VH CDR2 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR2 amino acid sequence, and the VH CDR3 region comprises an amino acid sequence that is at least 80% identical to a selected VH CDR3 amino acid sequence;
- and
- a light chain variable region (VL) comprising CDRs 1, 2, and 3, wherein the VL CDR1 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR1 amino acid sequence, the VL CDR2 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR2 amino acid sequence, and the VL CDR3 region comprises an amino acid sequence that is at least 80% identical to a selected VL CDR3 amino acid sequence,
- wherein the selected VH CDRs 1, 2, and 3 amino acid sequences and the selected VL CDRs, 1, 2, and 3 amino acid sequences are one of the following:
- (1) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 57-59, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (2) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 60-62, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- (3) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 66-68, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively;
- and
- (4) the selected VH CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 69-71, respectively, and the selected VL CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs:
- 1-3, respectively.
A nucleic acid comprising a polynucleotide encoding a polypeptide comprising:
- (1) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 57-59, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to TROP2;
- (2) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 66-68, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to TROP2;
- (3) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 73 binds to TROP2;
- (4) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 60-62, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to TROP2;
- (5) an immunoglobulin heavy chain or a fragment thereof comprising a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 69-71, respectively, and wherein the VH, when paired with a light chain variable region (VL) comprising the amino acid sequence set forth in SEQ ID NO:
- 53 binds to TROP2;
- and
- (6) an immunoglobulin light chain or a fragment thereof comprising a VL comprising complementarity determining regions (CDRs) 1, 2, and 3 comprising the amino acid sequences set forth in SEQ ID NOs:
- 1-3, respectively, and wherein the VL, when paired with a VH comprising the amino acid sequence set forth in SEQ ID NO:
- 74 binds to TROP2.
An antibody or antigen-binding fragment thereof that binds to TROP2 comprising
- a heavy chain variable region (VH) comprising an amino acid sequence that is at least 90% identical to a selected VH sequence, and a light chain variable region (VL) comprising an amino acid sequence that is at least 90% identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
- (1) the selected VH sequence is SEQ ID NO:
- 73, and the selected VL sequence is SEQ ID NO:
- 53;
- and
- (2) the selected VH sequence is SEQ ID NO:
- 74, and the selected VL sequence is SEQ ID NO:
- 53.
An antibody or antigen-binding fragment thereof that binds to TROP2 comprising
- a heavy chain variable region (VH) comprising VH CDR1, VH CDR2, and VH CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence;
- and a light chain variable region (VL) comprising VL CDR1, VL CDR2, and VL CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
- (1) the selected VH sequence is SEQ ID NO:
- 73, and the selected VL sequence is SEQ ID NO:
- 53;
- and
- (2) the selected VH sequence is SEQ ID NO:
- 74, and the selected VL sequence is SEQ ID NO:
- 53.
An anti-PTK7/TROP2 antibody or antigen-binding fragment thereof, comprising:
- a first antigen-binding domain that specifically binds to an epitope of PTK7;
- and a second antigen-binding domain that specifically binds to an epitope of TROP2.
Dependencies are inferred from the claim text.