Extracellular Matrix Binding Compounds for the Localized Loading of Therapeutic or Diagnostic Agents
AssigneeKamino ApS
InventorsAndreas Lodberg, Christian Brix Folsted Andersen, Marco Eijken
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AssigneeKamino ApS
InventorsAndreas Lodberg, Christian Brix Folsted Andersen, Marco Eijken
Estimating the term…
In the field of biological therapy, a major hurdle is the need for a platform technology that enables high bioavailability and long therapeutic exposure of a biological therapy in the setting of localized disease. Classical approaches result in problematic trade-offs such as toxicity and off-target side effects. The present disclosure provides compounds comprising follistatin domain 1 (FSD1) of follistatin (FST) which are able to bind biological structures, such as the extracellular matrix, through heparan sulfates, without bearing the undesirable neutralizing effects on activin A, myostatin, and GDF11 activities of e.g. full-length follistatin. The invention relates to fusion proteins or conjugated proteins, and compositions thereof, constructs or vectors encoding thereof, medical uses thereof and methods for biological therapy.
A fusion protein or conjugated protein comprising:
The fusion protein or conjugated protein according to any one of the preceding claims comprising:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein comprises or consists of an IgG Fc-homodimer, wherein each of the monomer of the IgG Fc-homodimer is C-terminally linked to at least one polypeptide (P1) (i) consisting of at least one FSD1 domain comprising or consisting of a polypeptide having at least 70% such as at least 80%, for instance at least 90%, such as at least 95%, for instance at least 99% sequence identity to SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein comprises or consists of an IgG Fc-heterodimer, wherein each of the monomer of the IgG Fc-heterodimer is linked C-terminally to at least one polypeptide (P1) (i) consisting of at least one FSD1 domain comprising or consisting of a polypeptide having at least 70% such as at least 80%, for instance at least 90%, such as at least 95%, for instance at least 99% sequence identity to SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims comprising:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein at least one of the monomers of the IgG Fc-heterodimer is linked N-terminally to at least one of the one or more polypeptide(s) (P1) (i), for example at least two polypeptides (P1), such as at least three polypeptides (P1), for example at least four polypeptides, such as at least five polypeptides (P1) consisting of at least one FSD1 domain comprising or consisting of a polypeptide having at least 70% such as at least 80%, for instance at least 90%, such as at least 95%, for instance at least 99% sequence identity to SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims wherein the therapeutic or diagnostic agent of any of the preceding claims, or the at least one the therapeutic or diagnostic moiety identical or different of any one of the preceding claims is one or more cytokine receptor.
The fusion protein or conjugated protein according to any one of the preceding claims wherein the therapeutic or diagnostic agent of any of the preceding claims, or the at least one the therapeutic or diagnostic moiety identical or different of any of the preceding claims comprises or consists of the ligand binding domain of TNFR2.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) consisting of at least one FSD1 domain comprising or consisting of a polypeptide having at least 70% sequence identity, such as at least 80% identity, for instance at least 90% identity, such as at least 95% identity, for instance 99% identity to SEQ. ID. NO:
The fusion protein or conjugated protein according to any one of the preceding claims comprising:
The fusion protein or conjugated protein according to any one of the preceding claims comprising:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) consist of a sequence having at least 70% similarity, such as at least 80% similarity, for instance at least 90% similarity, such as at least 95% similarity, for instance at least 99% similarity with a sequence selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) consist of a sequence having at least 70% similarity, such as at least 80% similarity, for instance at least 90% similarity, such as at least 95% similarity, for instance at least 99% similarity with a sequence selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) are encoded by a sequence comprising or consisting of a sequence having at least 70% similarity, such as at least 80% similarity, for instance at least 90% similarity, such as at least 95% similarity, for instance at least 99% similarity with SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i), do not neutralize the activity of myostatin (SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein said fusion protein or conjugated protein do not neutralize the activity of myostatin (SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims where said fusion protein or conjugated protein do not neutralize the activity of myostatin, GDF11 and/or activin A in a concentration range up to at least 5 nM, such as at least 7.5 nM, for example at least 8 nM, such as at least 8.2 nM, for example at least 8.4 nM, such as at least 8.6 nM, for example at least 8.8 nM, such as at least 9 nM, for example at least 10 nM, such as at least 12 nM, for example at least 15 nM, such as at least 20 nM, for example at least 30 nM, such as at least 40 nM, for example at least 50 nM, such as at least 80 nM, for example at least 100 nM, such as at least 150 nM, for example at least 200 nM.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) do not neutralize the activity of myostatin (SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims where in the one or more polypeptide(s) (P1) (i) do not neutralize the activity of myostatin, GDF11 and/or activin A in a concentration range up to at least 5 nM, such as at least 7.5 nM, for example at least 8 nM, such as at least 8.2 nM, for example at least 8.4 nM, such as at least 8.6 nM, for example at least 8.8 nM, such as at least 9 nM, for example at least 10 nM, such as at least 12 nM, for example at least 15 nM, such as at least 20 nM, for example at least 30 nM, such as at least 40 nM, for example at least 50 nM, such as at least 80 nM, for example at least 100 nM, such as at least 150 nM, for example at least 200 nM.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) bind heparan sulfate.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) comprising at least one FSD1 domain are encoded by a sequence comprising or consisting of a sequence having at least 70% identity, such as at least 80% identity, for instance at least 90% identity, such as at least 95% identity, for example at least 99% identity with SEQ. ID. NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptide(s) (P1) (i) comprising at least one FSD1 domain comprise or consist of a sequence having 100% identity with SEQ. ID. NO:
The fusion protein or conjugated protein according to any one of the preceding claims, further comprising a linker between the one or more polypeptide(s) (P1) (i) consisting of at least one FSD1 domain and the therapeutic or diagnostic agent (ii).
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims, is selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein further comprises a detectable moiety.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims binds a target selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims comprises or consists of the ligand binding domain of a protein having at least 70% similarity, such as at least 80% similarity, for instance at least 90% similarity, such as at least 95% similarity, for example at least 99% similarity with a sequence selected form the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii) of any one of the preceding claims, or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims comprises or consists of:
The fusion protein or conjugated protein according to any one of the preceding claims wherein the fusion protein or conjugated protein is ubiquitinylated.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims, bind to a target and wherein the fusion protein or conjugated protein according to any one of the preceding claims is able to bind heparan sulfate and said target at the same time.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein has a longer local half-life at the site of administration than the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding, alone.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein increases the binding of the therapeutic or diagnostic agent (ii), or of the therapeutic or diagnostic moiety identical or different of any one of the preceding claims, to the extracellular matrix compartment compared to the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims alone.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein increases the binding of the therapeutic or diagnostic agent (ii), or of the therapeutic or diagnostic moiety identical or different of any one of the preceding claims, to a predefined organ or a tumor compared to the therapeutic or diagnostic agent (ii), or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims alone.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the EC50 of the therapeutic or diagnostic agent (ii) or the therapeutic or diagnostic moiety identical or different, to a predefined organ or a tumor, compared to the therapeutic or diagnostic agent (ii) or the therapeutic or diagnostic moiety identical or different alone is decreased by at least a factor 2, such at least a factor 5, for example at least a factor 10, such as at least a factor 20, for example at least a factor 50, such as at least a factor 80, for example at least a factor 100, such as at least a factor 250, for example at least a factor 500, such at least a factor 1000, for example at least a factor 5000, such as at least a factor 10000, for example at least a factor 100000.
The fusion protein or conjugated protein according to any of the preceding claims, wherein the fusion protein or the conjugated protein increases the intracellular uptake of the therapeutic or diagnostic agent (ii), or of the therapeutic or diagnostic moiety identical or different of any one of the preceding claims compared to the therapeutic or diagnostic agent (ii) of any one of the preceding claims, or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims alone.
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the therapeutic or diagnostic agent (ii) of any of the preceding claims, or the therapeutic or diagnostic moiety identical or different of any one of the preceding claims is linked to at least one polypeptide (P1) (i), for example at least two polypeptides (P1) (i), such as at least three polypeptides (P1) (i), for example at least four polypeptides, such as at least five polypeptides (P1) (i) consisting of at least one FSD1 domain comprising or consisting of a polypeptide having at least 70% such as at least 80%, for instance at least 90%, such as at least 95%, for instance at least 99% sequence identity to SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein at least one of the at least one polypeptide (P1) (i) comprises or consists of a multimer of FSD1 domains, such as at least two FSD1 domains, for example at least three FSD1 domains, for example at least four FSD1 domains, such as at least five FSD1 domains consisting of a polypeptide having at least 70% such as at least 80%, for instance at least 90%, such as at least 95%, for instance at least 99% sequence identity to SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein comprises or consists of a polypeptide having at least 70% sequence identity, such as at least 80% sequence identity, for example at least 90% sequence identity, such as at least 95% identity, for example at least 99% identity with a sequence selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein comprises or consists of a polypeptide having at least 70% sequence identity, such as at least 80% sequence identity, for example at least 90% sequence identity, such as at least 95% identity, for example at least 99% identity with SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein comprises or consists of a polypeptide having at least 70% sequence identity, such as at least 80% sequence identity, for example at least 90% sequence identity, such as at least 95% identity, for example at least 99% identity with:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein does not comprise any other of the follistatin domains FSD2, FSD3, and/or a N-terminal follistatin domain, preferably wherein the fusion protein or conjugated protein does not comprise any of the human FSD2 of SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the one or more polypeptides (P1) (i) do not comprise any other of the follistatin domains FSD2, FSD3, and/or a N-terminal follistatin domain, preferably wherein the fusion protein or conjugated protein does not comprise any of the human FSD2 of SEQ ID NO:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the at least one FSD1 domain of the (i) one or more polypeptides (P1) comprises or consists of a variant FSD1 domain encoded by a sequence selected from the group consisting of:
The fusion protein or conjugated protein according to any one of the preceding claims, wherein the fusion protein or conjugated protein further comprises a PROTAC linker, preferably wherein the PROTAC linker is selected from the group consisting of:
One or more polynucleotides which upon expression encode the fusion protein or conjugated protein according to any one of the preceding claims.
One or more constructs or vectors encoding the fusion protein according to any of the preceding claims.
The method according to any one of the preceding claims, further comprising a step of administering the fusion protein or conjugated protein to a subject suffering from an ophthalmologic condition, and wherein the fusion protein or conjugated protein, or the composition is administered intravitreally, subretinally or suprachoroidally.
A method of degrading an intracellular protein, said method comprising the step of coupling the fusion protein or conjugated protein according to any one of the preceding claims to a ligand of E3 ubiquitin ligase, wherein the therapeutic or diagnostic agent (ii) of said fusion protein or conjugated protein binds to said intracellular protein.
One or more constructs or vectors encoding the one or more polypeptide(s) (P1) (i) of the fusion protein or conjugated protein according to any one of the preceding claims.
A composition comprising one or more polypeptides selected from the group consisting of:
Dependencies are inferred from the claim text.