Data integration and quality control system

A computer-implemented method, comprising:

• receiving omics datasets from one or more data sources, the omics datasets received from one or more data sources;
• checking data integrity of the omics datasets;
• performing a quality control check on the omics datasets, wherein the quality control check provides analysis on whether a region of an omics dataset passes one or more quality control thresholds, wherein the one or more quality control thresholds are determined using a machine learning model based on historical data quality metrics;
• receiving selections on the omics datasets that are selected to be processed based on one or more omics reference libraries;
• processing one or more selected omics datasets based on the one or more omics reference libraries, wherein the processing comprises mapping data of the one or more selected omics datasets to the one or more omics reference libraries to create mapped data;
• and
• integrating the mapped omics data with metadata to provide an integrated omics analysis;
• and
• causing to display, via a graphical user interface, information of the omics datasets and the integrated omics analysis.

A non-transitory computer-readable medium storing instructions that, when executed by one or more processors, cause the one or more processors to:

• receive omics datasets from one or more data sources, the omics datasets received from one or more data sources;
• check data integrity of the omics datasets;
• perform a quality control check on the omics datasets, wherein the quality control check provides analysis on whether a region of an omics dataset passes one or more quality control thresholds, wherein the one or more quality control thresholds are determined using a machine learning model based on historical data quality metrics;
• receive selections on the omics datasets that are selected to be processed based on one or more omics reference libraries;
• process one or more selected omics datasets based on the one or more omics reference libraries, wherein the processing comprises mapping data of the one or more selected omics datasets to the one or more omics reference libraries to create mapped data;
• and
• integrating the mapped omics data with metadata to provide an integrated omics analysis;
• and
• cause to display, via a graphical user interface, information of the omics datasets and the integrated omics analysis.