A method of operating a storage system for the storage of transport units in storage locations that are at least double deep and are arranged in a plurality of storage racks with multiple storage rack levels for storage of the transport units, the storage racks having a storage racking aisle between them, and at least one automated storage and retrieval apparatus is controlled to travel along each storage racking aisle, wherein the automated storage and retrieval apparatus has a carrying area for carrying transport units and a load handler for displacing transport units into the storage locations that are at least double deep and for removal of transport units from the storage locations that are at least double deep, wherein said method comprises:
- controlling the automated storage and retrieval apparatus to place the transport units in a depth position of a storage location based on features of items within the transport units.