A non-transitory computer readable medium that stores a set of instructions that is executable by at least one processor of a computing device to cause the computing device to perform operations for operating a charged particle system, the charged particle system comprising an aperture array in which is defined an array of apertures, a beam-limit array arranged downbeam of the aperture array and in which is defined an array of beam-limit apertures, and a condenser lens system arranged between the aperture array and the beam-limit array, the operations comprising:
- sending a first signal that causes the charged particle system to pass a charged particle beam through the apertures of the aperture array;
- sending a second signal that causes the charged particle system to operate the condenser lens system at one or more different rotation settings, each rotation setting defining a different beam path between the aperture array and the beam-limit array;
- and
- sending a third signal that causes the charged particle system to, for each rotation setting, direct the charged particles from the aperture array through each of the beam-limit apertures of the beam-limit array.