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US 2026/0146272 A1Published application
Enzymatic synthesis of modified nucleoside triphosphate analogues
AssigneeIllumina, Inc.
InventorsSadeer Salam, Xiangyuan Yang, Yvonne Devadas, Yin Nah Teo, Saurabh Nirantar, Ramesh Neelakandan, Hassan Bohra
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Abstract
The present disclosure generally relates to methods for the enzymatic synthesis of nucleotide triphosphates. In particular, the methods include a one-pot preparation of a modified nucleotide triphosphate starting from 3′-vinyl blocked nucleoside monophosphate.
Claims24
A method of enzymatic synthesis of a nucleoside triphosphate having the structure of Formula (I):
- or a salt thereof,
- the method comprising:
- (a) contacting a nucleoside monophosphate having the structure of Formula (II) or a salt thereof with a first phosphate donor in the presence of a nucleoside monophosphate (NMP) kinase to form a nucleoside diphosphate of Formula (III) or a salt thereof:
- and
- (b) reacting the nucleoside diphosphate of Formula (II) or the salt thereof with a second phosphate donor in the presence of a nucleoside diphosphate (NDP) kinase to form the nucleoside triphosphate of Formula (I) or the salt thereof:
- wherein:
- R1 is —ORa, —SRa, —NRbRc, or —BH3;
- each of R2 and R3 is independently H, C1-C6 alkyl, C1-C6 hydroxyalkyl, —C(═O)H, —C(═O)OH, —N3, —ORa, —NRbRc, or
- R4 is H, —CH2N3, —CHRaN3, —CH2—CH═CH2, —CH═CH2, —CH2—O—CH2—CH═CH2, or a 3′ hydroxy blocking group;
- R5 is H, C1-C6 alkyl, vinyl, halo, —ORe or a protected hydroxy group;
- Y is O, S or Se;
- each of Ra, Rb and Rc is independently H, or unsubstituted or substituted C1-C6 alkyl;
- Rd is independently H, halo, C1-C6 alkyl, C1-C6 haloalkyl —CN, —C(═O)H, —C(═O)OH, —SO2 (C1-C6 alkyl), —N3, —OH, or —NRbRc;
- Re is H, unsubstituted or substituted C1-C6 alkyl, —CH2N3, —CHRaN3, —CH2NRbRc, —CH2—CH═CH2, —CH═CH2, or —CH2—O—CH2—CH═CH2;
- and
- Z is a natural nucleobase or a modified natural nucleobase;
- provided that when Y is O, R1 is —OH, R5 is OH or H, then at least one of R2, R3 and R4 is not H.
14 more elements
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Dependencies are inferred from the claim text.