Dot1l degraders and uses thereof
AssigneeDana-Farber Cancer Institute, Inc.
InventorsScott Armstrong, Jun Qi
Life of this patent
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Abstract
Provided herein are bifunctional compounds with a moiety or domain that is a binder of the ubiquitin receptor RPN13 and another moiety or domain that is a binder of a target protein DOT1L to induce degradation of DOT1L. Also provided are pharmaceutical compositions comprising the bifunctional compounds, and methods of treating and/or preventing diseases (e.g., proliferative diseases, such as cancers). Provided also are methods of inducing the degradation of DOT1L by administering a bifunctional compound or composition described herein, wherein one domain of the bifunctional compound is a binder of the ubiquitin receptor RPN13 and another domain of the compound is a binder of the target protein DOT1L in a subject.
Claims20
A compound of Formula (I):
- or a pharmaceutically acceptable salt, solvate, hydrate, tautomer, or stereoisomer thereof, wherein:
- R8 is hydrogen, optionally substituted acyl, optionally substituted alkyl, or a nitrogen protecting group;
- R9 is hydrogen, optionally substituted acyl, optionally substituted alkyl, or a nitrogen protecting group;
- R10 is hydrogen, optionally substituted acyl, optionally substituted alkyl, or a nitrogen protecting group;
- R11 is halogen, optionally substituted acyl, or optionally substituted alkyl;
- each instance of R12 is independently hydrogen, optionally substituted acyl, or an oxygen protecting group;
- L is
- and
- lR indicates the point of attachment to D, and lA indicates the point of attachment to the moiety of formula
- X is —CH2— or —O—;
- ring B is an optionally substituted 5-10 membered heterocyclyl or optionally substituted 5-14 membered heteroaryl group;
- n1 is 1, 2, 3, 4, 5, or 6;
- n2 is 1, 2, 3, 4, 5, or 6;
- n3 is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12;
- g is 1, 2, 3, 4, 5, or 6;
- and
- g1 is 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10;
- and
- D is of the formula IA or IB:
- wherein:
- for each set of two moieties A bound to the same carbon atom, one A is hydrogen, and the other A is one of:
- (i) phenyl, optionally substituted with 1-5 substituents selected from the group consisting of —R1, —OR1, —NR1R2, —S(O)qR1, —SO2R1R2, —NR1SO2R2, —C(O)R1, —C(O)OR1, —C(O)NR1R2, —NRIC(O)R2, —NRIC(O)OR2, —CHF2, —CH2F, —CF3, and —OCF3;
- (ii) naphthyl, optionally substituted with 1-5 substituents selected from the group consisting of —R1, —OR1, —NR1R2, —S(O)qR1, —SO2R1R2, —NR1SO2R2, —C(O)R1, —C(O)OR1, —C(O)NR1R2, —NRIC(O)R2, —NRIC(O)OR2, —CHF2, —CH2F, —CF3, and —OCF3;
- (iii) a 5- or 6-membered monocyclic heteroaryl group, having 1-3 heteroatoms selected from the group consisting of O, N, and S, optionally substituted with 1-3 substituents selected from the group consisting of —R1, —OR1, —NR1R2, —S(O)qR1, —SO2R1R2, —NR1SO2R2, —C(O)R1, —C(O)OR1, —C(O)NR1R2, —NR1C(O)R2, —NRIC(O)OR2, —CHF2, —CH2F, —CF3, and —OCF3;
- and
- (iv) an 8- to 10-membered bicyclic heteroaryl group containing 1-3 heteroatoms selected from the group consisting of O, N, and S, and having a first ring fused to a second ring through 3 to 4 carbon atoms, wherein the bicyclic heteroaryl group is optionally substituted with 1-3 substituents selected from the group consisting
- of —R1, —OR1, —NR1R2, —S(O)qR1, —SO2R1R2, —NR1SO2R2, —C(O)R1, —C(O)OR1, —C(O)NR1R2, —NR1C(O)R2, —NR1C(O)OR2, —CHF2, —CH2F, —CF3, and —OCF3;
- Y is ═O, ═S, ═NR1, or ═CR1R2,
- R1 and R2 are each independently selected from the group consisting of hydrogen, nitro, hydroxyl, —COOH, —NH2, halogen, cyano, and C1-C14 alkyl optionally substituted with 1-3 substituents selected from the group consisting of C1-C14 alkyl, C1-C14haloalkyl, C1—C14 alkoxy, nitro, hydroxyl, —COOH, —NH2, C1-C14 alkylamino, C1-C14 dialkylamino, halogen, and cyano;
- R7 is hydrogen, optionally substituted C1-6 alkyl, or a nitrogen protecting group;
- Z is selected from the group consisting of hydrogen, optionally substituted C1-C14 alkyl, optionally substituted C3-C10 cycloalkyl, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkyl-aryl, and —(CH2)p—K;
- K is a 5- or 6-membered monocyclic heterocyclic or heteroaryl group containing 1-4 heteroatoms selected from the group consisting of O, N, and S, or an 8- to 10-membered bicyclic heteroaryl group containing 1-4 heteroatoms selected from the group consisting of 0, N, and S;
- p is an integer selected from the group consisting of 0, 1, 2, 3, and 4;
- and
- q is an integer selected from the group consisting of 0, 1, and 2.
A compound which is:
- or a pharmaceutically acceptable salt, tautomer, stereoisomer, solvate, or hydrate, thereof,
- wherein X is CH2 or O;
- and
- g1 is 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
A compound which is:
- or a pharmaceutically acceptable salt, solvate, hydrate, tautomer, or stereoisomer thereof.
Dependencies are inferred from the claim text.