Decarboxylative acetoxylation using mn(ii) or mn(iii) reagent for synthesis of 4'-acetoxy-nucleoside and use thereof for synthesis of corresponding 4'-(dimethoxyphosphoryl)methoxy-nucleotide
AssigneeDicerna Pharmaceuticals, Inc.
InventorsKurt Edric VAGLE, Sayantan BHADURI, Guohan YANG
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Abstract
The present invention relates to the preparation of nucleic acids, nucleosides, nucleotides, and analogues thereof useful as potent and stable RNA interference agents. The present invention provides improved yields and avoids the use of lead tetraacetate for decarboxylative acetylation which decreases the overall cost of production by removing the need for lead remediation and offers a significant reduction in the environmental costs in production.
Claims27
A process for preparing a compound comprising an acetoxy group, wherein the compound comprising an acetoxy group is represented by formula B:
- or salt thereof, comprising the steps:
- (a) providing a compound comprising a carboxyl group represented by formula A:
- or salt or ester thereof, and
- (b) subjecting the compound of formula A to conditions sufficient to form the compound of formula B, wherein the conditions comprise a manganese(II) reagent and an oxidizing agent, or wherein the conditions comprise a manganese(III) reagent, and wherein:
- RA is an optionally substituted group selected from alkyl, aryl, heteroaryl, carbocyclyl, heterocyclyl, protected amino acid, protected nucleoside, protected nucleotide, and protected oligonucleotide, wherein each of aryl and heteroaryl is independently monocyclic or bicyclic and each of carbocyclyl and heterocyclyl is independently monocyclic, bicyclic, bridged bicyclic, or spirocyclic.
A process for preparing a nucleoside or analogue thereof comprising a 4′-acetoxy group, wherein the nucleoside or analogue thereof comprising a 4′-acetoxy group is represented by formula I-b:
- or a salt thereof, comprising the steps:
- (a) providing a nucleoside or analogue thereof comprising a 4′-carboxyl group represented by formula I-a:
- or a salt or ester thereof, and
- (b) subjecting the nucleoside or analogue thereof of formula I-a to conditions sufficient to form the nucleoside or analogue thereof of formula I-b,
- wherein the conditions comprise a manganese(II) reagent and an oxidizing agent, or wherein the conditions comprise a manganese(III) reagent, and wherein:
- each B is independently a nucleobase or hydrogen;
- each R4 is independently hydrogen, fluoro, —OH, —OC1-6alkyl, —OCH2CH2OC1-6alkyl, or —O-protecting group (—OPG);
- each X3 is independently —O—, —S—, or —N(R)—;
- each R is independently hydrogen, a protecting group (PG), or an optionally substituted group selected from C1-6 aliphatic, phenyl, a 4-7 membered saturated or partially unsaturated carbocyclic or heterocyclic having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and a 5-6 membered heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or:
- two R groups on the same atom are taken together with their intervening atoms to form a 4-7 membered saturated or partially unsaturated carbocyclic or heterocyclic ring having 0-3 heteroatoms, independently selected from nitrogen, oxygen, and sulfur;
- each Y2 is independently hydrogen or a protecting group (PG);
- each Z is independently —O—, —S—, —N(R)—, or —C(R)2—;
- and
- each n is independently 0, 1, 2, 3, 4, or 5.
A process for preparing a nucleoside or analogue thereof comprising a 4′-acetoxy group, wherein the nucleoside or analogue thereof comprising a 4′-acetoxy group is represented by formula I-b-1:
- or a pharmaceutically acceptable salt thereof, comprising the steps:
- (a) providing a nucleoside or analogue thereof comprising a 4′-carboxyl group represented by formula I-a-1:
- or a pharmaceutically acceptable salt or ester thereof, and
- (b) subjecting the nucleoside or analogue thereof of formula I-a-1 to conditions sufficient to form the nucleoside or analogue thereof of formula I-b-1,
- wherein the conditions sufficient to form the nucleoside or analogue thereof of formula I-b-1 comprise the steps:
- (i) combining the nucleoside or analogue thereof of formula I-a-1 with dichloroethane (DCE) to form a mixture;
- (ii) adding AcOH to the mixture of step (a) with agitation;
- (ii) adding Mn(OAc)2 and (diacetoxyiodo)benzene) (DIB) to the agitated mixture of step (b);
- and
- (iv) heating the mixture of step (c) at about 80° C. for about 5 hours, wherein:
- each B is independently a nucleobase;
- each PG is a protecting group;
- each R4 is independently hydrogen, fluoro, —OH, —OC1-6alkyl, —OCH2CH2OC1-6alkyl, or —O-protecting group (—OPG);
- each Z is independently —O—, —S—, —N(R)—, or —C(R)2—;
- and
- each R is independently hydrogen, a protecting group, or an optionally substituted group selected from C1-6 aliphatic, phenyl, a 4-7 membered saturated or partially unsaturated heterocyclic having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and a 5-6 membered heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or:
- two R groups on the same atom are taken together with their intervening atoms to form a 4-7 membered saturated or partially unsaturated carbocyclic or heterocyclic ring having 0-3 heteroatoms, independently selected from nitrogen, oxygen, and sulfur.
Dependencies are inferred from the claim text.