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US 2025/0051838 A1Published application
Method for detecting target sequences
Assignee3Cr Bioscience Ltd
InventorNisha JAIN
Life of this patent
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Abstract
The present invention relates to a method for detecting one or more target sequences in a sample by amplification. Kits and compositions for use with the method are also provided.
Claims42
A method for detecting one or more target sequences in a sample comprising RNA by amplification, the method comprising:
- a) providing an aqueous composition comprising:
- i) one or more forward oligonucleotide primers having a 5′ region which is a tag sequence and a 3′ region specific for a target sequence;
- ii) a reverse oligonucleotide primer, such that a forward and the reverse primer operably form a primer pair;
- iii) one or more probes having a reporter label and a quencher label, each probe comprising a sequence having at least 50% identity to the tag sequence of a forward oligonucleotide primer;
- and
- iv) optionally one or more enhancer oligonucleotide primers comprising a sequence having at least 50% identity to the sequence of a probe;
- b) combining the primers, the probes, the sample, a polymerase, and a reverse transcriptase in a reaction mixture with a buffer;
- and
- c) performing a one-step polymerase chain reaction (PCR) on the reaction mixture to generate tagged nucleic acids, whereby the probe(s) can bind the tagged nucleic acids.
6 more elements
A kit for use in a nucleic acid amplification process, comprising:
- i) one or more forward oligonucleotide primers having a 5′ region which is a tag sequence and a 3′ region specific for a target sequence;
- ii) a reverse oligonucleotide primer, such that a forward and the reverse primer operably form a primer pair;
- iii) one or more probes having a reporter label and a quencher label, each probe comprising a sequence having at least 50% identity to the tag sequence of a forward oligonucleotide primer;
- iv) a polymerase;
- v) a reverse transcriptase;
- vi) a buffer;
- and
- vii) optionally one or more enhancer oligonucleotide primers comprising a sequence having at least 50% identity to the sequence of a probe.
5 more elements
A buffer composition suitable for a one-step reverse transcriptase polymerase chain reaction (RT-PCR), wherein the buffer comprises:
- (a) KCl and the KCl is at a working concentration of no more than 60 mM, optionally wherein the working concentration of KCl is about 40 mM to about 60 mM, about 45 mM to about 55 mM, or about 50 mM;
- and
- (b) a non-ionic surfactant.
Dependencies are inferred from the claim text.